Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1380 CGCAACCTAGGGCTCCAATTCTTGCGTTTTGGCCTTGATTTCCACCGCCTTCTGCTTCGCCTTCTCTTCTTTGGTAAAGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAGGATGGTCAGGAGTATGCACAAGTTCTTAGAATGTTGGGAAATGGTCGGTGTGAGGCAATGTGCATCGATGGGACGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTCGGTCTTCGTGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCGTATGGTGAGCTTCCTGAGAGCACCCGTCTCAACGAGGGTATCGCTGGTGGTATCGACGACGAGGATGATGGTGGGGCTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAG 528 47.16 RNLGLQFLRFGLDFHRLLLRLLFFGKETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40521399 40523214 - Maker00001039 Lcy8g1380 640272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1380 175 MobiDBLite consensus disorder prediction 147 175 - -
Lcy8g1380 175 SMART eIF1neu4 58 140 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 Pfam Translation initiation factor 1A / IF-1 62 123 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 CDD S1_IF1A 63 139 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 MobiDBLite consensus disorder prediction 152 175 - -
Lcy8g1380 175 Hamap Translation initiation factor 1A [eif1a]. 46 140 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 FunFam Eukaryotic translation initiation factor 1A 32 175 - -
Lcy8g1380 175 NCBIfam translation initiation factor eIF-1A 44 140 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 SUPERFAMILY Nucleic acid-binding proteins 32 174 IPR012340 -
Lcy8g1380 175 PANTHER EIF-1A 31 175 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Lcy8g1380 175 MobiDBLite consensus disorder prediction 33 52 - -
Lcy8g1380 175 Gene3D - 32 175 IPR012340 -
Lcy8g1380 175 ProSiteProfiles S1 domain IF1 type profile. 52 126 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy8g1380 175 ProSitePatterns Eukaryotic initiation factor 1A signature. 71 93 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1150 Lcy-Chr11:33863644 Lcy8g1380 Lcy-Chr8:40521399 1.41E-100 transposed
Lcy4g0496 Lcy-Chr4:6049836 Lcy8g1380 Lcy-Chr8:40521399 1.51E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1380 K03236 - rcu:8265575 262.307