Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1391 ATGATCGAGAAAATGGCCGATGATGAATTCTCAAACTGTTTTCTCCAAATCCCTCTTGCCGGATCCAACCCTTCTCTCGTCAAGAAGAAGAGAAACCTCCCTGGAACCCCGGATCCCGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACGAATAGGTTCGTGTGCGAAATATGTGGGAAGGGATTTCAAAGAGACCAAAACTTGCAGCTCCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAAAGAAGAGAGTGTATGTATGTCCTGAGAAGAGCTGTGTGCATCACCATCCATCGAGGGCTTTGGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGAAAGCACGGAGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAGTCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGCGGGACTCTATTTTCAAGGAGAGACAGCTTCATCACTCACAGGGCCTTCTGCGATGCATTAGCCGAAGAAACAGCAAGAGTAAACGCAGCCACAACAATAACCAACGCCATGGCCGCCGCCAGCAATTTCAATTACAATTTCATGGCCGGAGCCACAGAACCTCCATTCATTTCCCAACATTTCCCTTCAATTTTCAAGCCAATCTCAGTGAACGAAGCAACAATATTGAACCAGCAACAGCAACAACAAACAACCAGCTGCAGTGGCCTCTCCTTGAGAACCAACAACAACAATAATCTAATAAACCCCATGAATTCAGGGCTAATGTACTGTGACCCTCTATTAAATTCTTGCCCACCACCAGCACTAGCTGATTATAATCTGAATTGGGTATTTGGAACGAAGGTTTCTTCTCCAAAGAATAATTGTGATCATGATAATGAAGATTCAGATCAAAATCATCAGCCGTTGATGAGTGGTGGTGTTTCATCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCAAATTTGTCAGCCACTGCTTTGCTGCAAAAAGCTGCTCAAATTGGGCCAAATTCCAGCTCCGGCCCATCAATAATGCTCCAAGAGGGATTTGCATTCAAATGCAGTGGCAGTACGGTTCAAAATGGGAATGAATTTTCCAATTCTGGCTCTGCAAACCCAATTATGGCGACGGTTGCCAGTTTTGCTGAGAATGAGAATGAGAATGAGATGTACACTGCAAAACGCCGTCGTACTCAGAGTGAATTAGAGGGTGGAAATGGAAGTGGAACAACAGGACGAGGCCAGACCAGGGATTTTCTTGGGGTTGGTGCCAATACTATTTGCCACACCTCATCAATCAATGGATGGATTTAG 1383 45.55 MIEKMADDEFSNCFLQIPLAGSNPSLVKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITNAMAAASNFNYNFMAGATEPPFISQHFPSIFKPISVNEATILNQQQQQQTTSCSGLSLRTNNNNNLINPMNSGLMYCDPLLNSCPPPALADYNLNWVFGTKVSSPKNNCDHDNEDSDQNHQPLMSGGVSSLYSHQLQQVNQTHMANLSATALLQKAAQIGPNSSSGPSIMLQEGFAFKCSGSTVQNGNEFSNSGSANPIMATVASFAENENENEMYTAKRRRTQSELEGGNGSGTTGRGQTRDFLGVGANTICHTSSINGWI 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40605432 40607696 - Maker00000791 Lcy8g1391 640283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1391 460 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Lcy8g1391 460 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Lcy8g1391 460 SMART c2h2final6 133 153 IPR013087 -
Lcy8g1391 460 SMART c2h2final6 57 79 IPR013087 -
Lcy8g1391 460 MobiDBLite consensus disorder prediction 418 440 - -
Lcy8g1391 460 Gene3D Classic Zinc Finger 53 80 - -
Lcy8g1391 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lcy8g1391 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 447 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy8g1391 460 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Lcy8g1391 460 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lcy8g1391 460 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Lcy8g1391 460 Gene3D Classic Zinc Finger 91 181 - -
Lcy8g1391 460 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Lcy8g1391 460 MobiDBLite consensus disorder prediction 305 325 - -
Lcy8g1391 460 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Lcy8g1391 460 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1384 Lcy-Chr1:13398972 Lcy8g1391 Lcy-Chr8:40605432 9.63E-109 dispersed
Lcy3g1572 Lcy-Chr3:42811765 Lcy8g1391 Lcy-Chr8:40605432 4.44E-106 dispersed
Lcy5g0280 Lcy-Chr5:2632744 Lcy8g1391 Lcy-Chr8:40605432 6.81E-103 dispersed
Lcy8g1391 Lcy-Chr8:40605432 Lcy9g2183 Lcy-Chr9:46486329 1.86E-100 dispersed
Lcy4g0506 Lcy-Chr4:6142363 Lcy8g1391 Lcy-Chr8:40605432 1.12E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20525 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1391 K25870 - csv:101211656 532.717