Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1396 ATGCCGAAGGGTTTGAAGAGTAAATGCCAATCTGCTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAGCCGGGTTAATGACCTTCAAGGGATATTCACTAATCTTCAGTCTGCTAGGAAGGAGAGTCGTGCTACTGACGTTGCTGTCTTGGAGGAGCAAGTACATCAGATGCTTAGGGAGTGGAATGCTGAACTTAACGAACCGTCACCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCTCAAGAATTAGCCCGTCTTCTCGAGCATTGTGATGAGCTAGACGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGCCTGATCTCCATTGCGTTCTTGCCAGCAATGTGTCAAATTTTCAGCAGGTAGGTCTTTTCTTCATTTTCATTTTTGGTGAATTCCTTGTTTCAGTGGCCAAATCAGATATTTCAGGTCCTCTGGATGGTTTTGGTATTCCGGAGCTCCAACAGGATAGTTTTCTTGGATTTGAAGAGTGCAAAGTTTCTACCCCAGTCCTACAGAATTATTCGTTTTACAAATCAGACATGGCTACTCAGTCTAATAGTCAGGATTTCAAATTAGATCAGAACGTTGTGCAGAACACAGTGGTCAGTAAGGATGATATGTCTACTTTGGCTTGCCATTTATTGGATTCACATCAAGAGTATGACTATGGCGTTCTTATTGGGGCATATGATGTGGGAAACTTTAGTCAGGACACAAAGCCTGGTTTTCTCCCAAATATCTCGCCCCCACCGTCTGCTTTTATGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTATTCTTGCAATAAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGGGGCATTGACTTAAAGGATGGGCCATTGTTTGCTGCTCTTCGTGCAAAGACACAGGACAAAGCAGTTGGAATACCTATATGTGATGGTGCTGCAACAAAGAAATCTCCATGGAATGCTCCTGTTGGATTTATTGGTGTGCGTTCTGCTTCTGTTATAGTAGTTATTTTCATTGTTGCAGAGCTTTTTGATATTTCGTTTCTTGAGGGCGAGACAATCAGGGAATGGCTCTATTTTGACAGGCCTAGACGGGCCTTTGAGAGTGGTAACCGAAAGCAAAGGTCATTACCGGATTATAGAGGCCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCTATAGAATGGCACTTGTACGAATATGATATCAGCAATTATGATTCATTTGCCTTGTATAGGCTGGAACTCAAGCATGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAATCAATTAAAGGTGTGACGAAGGCAAATAATAAGGCTGATACTGTAAATATCAATCTTGCTCCTCATCTTCAGAACATGTCTAACACTAATTGA 1584 43.62 MPKGLKSKCQSASHQLLKEKAKSRVNDLQGIFTNLQSARKESRATDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDELDDATSILAEPKAEPDLHCVLASNVSNFQQVGLFFIFIFGEFLVSVAKSDISGPLDGFGIPELQQDSFLGFEECKVSTPVLQNYSFYKSDMATQSNSQDFKLDQNVVQNTVVSKDDMSTLACHLLDSHQEYDYGVLIGAYDVGNFSQDTKPGFLPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSILAINEGLPGMTPILRPGGIDLKDGPLFAALRAKTQDKAVGIPICDGAATKKSPWNAPVGFIGVRSASVIVVIFIVAELFDISFLEGETIREWLYFDRPRRAFESGNRKQRSLPDYRGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSIEWHLYEYDISNYDSFALYRLELKHADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQSIKGVTKANNKADTVNINLAPHLQNMSNTN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40645792 40649442 + Maker00000303 Lcy8g1396 640288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1396 527 PANTHER TRANSCRIPTION FACTOR VOZ1 1 522 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0304 Lcy-Chr1:2704587 Lcy8g1396 Lcy-Chr8:40645792 5.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20526 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1396 - - - 0.0