Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1396 ATGCCGAAGGGTTTGAAGAGTAAATGCCAATCTGCTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAGCCGGGTTAATGACCTTCAAGGGATATTCACTAATCTTCAGTCTGCTAGGAAGGAGAGTCGTGCTACTGACGTTGCTGTCTTGGAGGAGCAAGTACATCAGATGCTTAGGGAGTGGAATGCTGAACTTAACGAACCGTCACCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCTCAAGAATTAGCCCGTCTTCTCGAGCATTGTGATGAGCTAGACGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGCCTGATCTCCATTGCGTTCTTGCCAGCAATGTGTCAAATTTTCAGCAGGTAGGTCTTTTCTTCATTTTCATTTTTGGTGAATTCCTTGTTTCAGTGGCCAAATCAGATATTTCAGGTCCTCTGGATGGTTTTGGTATTCCGGAGCTCCAACAGGATAGTTTTCTTGGATTTGAAGAGTGCAAAGTTTCTACCCCAGTCCTACAGAATTATTCGTTTTACAAATCAGACATGGCTACTCAGTCTAATAGTCAGGATTTCAAATTAGATCAGAACGTTGTGCAGAACACAGTGGTCAGTAAGGATGATATGTCTACTTTGGCTTGCCATTTATTGGATTCACATCAAGAGTATGACTATGGCGTTCTTATTGGGGCATATGATGTGGGAAACTTTAGTCAGGACACAAAGCCTGGTTTTCTCCCAAATATCTCGCCCCCACCGTCTGCTTTTATGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTATTCTTGCAATAAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGGGGCATTGACTTAAAGGATGGGCCATTGTTTGCTGCTCTTCGTGCAAAGACACAGGACAAAGCAGTTGGAATACCTATATGTGATGGTGCTGCAACAAAGAAATCTCCATGGAATGCTCCTGTTGGATTTATTGGTGTGCGTTCTGCTTCTGTTATAGTAGTTATTTTCATTGTTGCAGAGCTTTTTGATATTTCGTTTCTTGAGGGCGAGACAATCAGGGAATGGCTCTATTTTGACAGGCCTAGACGGGCCTTTGAGAGTGGTAACCGAAAGCAAAGGTCATTACCGGATTATAGAGGCCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCTATAGAATGGCACTTGTACGAATATGATATCAGCAATTATGATTCATTTGCCTTGTATAGGCTGGAACTCAAGCATGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAATCAATTAAAGGTGTGACGAAGGCAAATAATAAGGCTGATACTGTAAATATCAATCTTGCTCCTCATCTTCAGAACATGTCTAACACTAATTGA 1584 43.62 MPKGLKSKCQSASHQLLKEKAKSRVNDLQGIFTNLQSARKESRATDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDELDDATSILAEPKAEPDLHCVLASNVSNFQQVGLFFIFIFGEFLVSVAKSDISGPLDGFGIPELQQDSFLGFEECKVSTPVLQNYSFYKSDMATQSNSQDFKLDQNVVQNTVVSKDDMSTLACHLLDSHQEYDYGVLIGAYDVGNFSQDTKPGFLPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSILAINEGLPGMTPILRPGGIDLKDGPLFAALRAKTQDKAVGIPICDGAATKKSPWNAPVGFIGVRSASVIVVIFIVAELFDISFLEGETIREWLYFDRPRRAFESGNRKQRSLPDYRGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSIEWHLYEYDISNYDSFALYRLELKHADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQSIKGVTKANNKADTVNINLAPHLQNMSNTN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40645792 40649442 + Maker00000303 Lcy8g1396 640288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1396 527 PANTHER TRANSCRIPTION FACTOR VOZ1 1 522 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1396 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0304 Lcy-Chr1:2704587 Lcy8g1396 Lcy-Chr8:40645792 5.40E-163 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0304 . 2 492 VOZ-9 Transcription Factor Family AT1G28520 69.8 1.3e-196 683.3
Lcy8g1396 . 6 514 VOZ-9 Transcription Factor Family AT1G28520 51.7 6.6e-129 458.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20526 None None None None Lcy TF