Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1443 | ATGGAGAGCTTATTAATTCTTACATTGATTGGTTGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCGGTTGTGAACATTGGTGCGGTTTTCACTTTTGATTCTGTTATAGGAAGAGCGGCAAAGGTGGCAATGGAAGCTGCAATTTCGGATGTTAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGACGTAGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTACCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATTCCTATCAAATGACTGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGACGAACTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTGCCTTCTCAGTTTAATCTCAGTGAAATCACAGACATACTCAATAAATCCAAGTTGCTTGGTCCTCGTATCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCTCATCAACTTAATATGATGACAAGTGGTTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTGCCCGTGCACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGTCAACATACTCCTGAATCCAGCCGAAAAACAGCATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGGTCCAGAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTTCAATTGATAAGTTTCTTAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAGCAGGTTTCATGATTTAAATACATCTAAAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTTTTCTTTTGAGCATATTGTTGCAGACAAAATTTACTGGTTTAAGTGGTCAGATTGAGTTCAATTCAGATCGGAACATTGTCAATAGAGGCTATGAGTTGATCAATATCGATCAAACTGGATTGCGTAAAGTTGGTTTCTGGTCTAACATCACAGGCTTTGCAATCCAATCACCAGAAACTTTGAAACAGAAACGAATTAGTTATACTCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACTTAGAGTAAGCTTCATTGAATTTGTTACAGCAATCAATGGAAGCGACAAAAACATTGAAGGGTATTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTCCCGTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCCACTCTAATCCTAGTTATAATGACCTTGTGAAGAAAGTTGCAGATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGTACTAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCGAATGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCAGCGTCCTTTTTTATGATTGGCGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTAATAATATCTGAAAATATTTCCATCTTGCAGATTTCTGACTTCACAACTCAAATTACAGAGGAAGATACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACAGCCAATTGGCTATCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTACCTCTAGGCTCTCCCGAAGAGTATGAGTTGGCACTGCTGAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAGTTATTCTTATCAGGGAGGAACGATTTCGGAATGGTCGGGCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTCCAGAGAGGATCTCCACTTGCGATAGACATTTCAACTGCAATTCTAAAGCTATCCGAGAATGGAATGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAAGATGGGCTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTGGTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCACTTTTTATATTTTTGCTCCGCATAGTTCGACAATTCGCTCGCTACATACGACAACAGAAGGAATCTTCTCAGGCAGAGTTGGTATCATCAAATTCAAACTCAAACTGGACTCAGGTTATATATAAGTTTATCGACTTTGTCGATGAGAAGGAAGAGGCCATTAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAACTGA | 2763 | 40.75 | MESLLILTLIGWAFLAGSACCQRPAVVNIGAVFTFDSVIGRAAKVAMEAAISDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMTAMAELIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSQFNLSEITDILNKSKLLGPRIYVVHVNPDPRLSIFKIAHQLNMMTSGYVWLATDWLSTTLDSILPVHQTSLNILQGVVVLRQHTPESSRKTALWSRLRKMLPEGSRNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSLKSRFHDLNTSKMPWGKLKIFDDGAFLLSILLQTKFTGLSGQIEFNSDRNIVNRGYELINIDQTGLRKVGFWSNITGFAIQSPETLKQKRISYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPLRVSFIEFVTAINGSDKNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGHSNPSYNDLVKKVADGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILIISENISILQISDFTTQITEEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEQPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYELALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMVGQPFTKSGWGFAFQRGSPLAIDISTAILKLSENGMLQKIHEKWFCKMGCPGERRRKSEPNQLHLVSFWGLYLLCGAFSLAALFIFLLRIVRQFARYIRQQKESSQAELVSSNSNSNWTQVIYKFIDFVDEKEEAIKRLFRKNDTQNQAN | 920 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 41083633 | 41089803 | + | Maker00000897 | Lcy8g1443 | 640335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1443 | 920 | Gene3D | - | 576 | 717 | - | - | |
Lcy8g1443 | 920 | Gene3D | - | 763 | 822 | - | - | |
Lcy8g1443 | 920 | Coils | Coil | 899 | 919 | - | - | |
Lcy8g1443 | 920 | FunFam | Glutamate receptor | 711 | 819 | - | - | |
Lcy8g1443 | 920 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 480 | 567 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy8g1443 | 920 | FunFam | Glutamate receptor | 142 | 298 | - | - | |
Lcy8g1443 | 920 | Gene3D | - | 473 | 575 | - | - | |
Lcy8g1443 | 920 | PIRSF | IGluLR_plant | 1 | 920 | IPR017103 | - | |
Lcy8g1443 | 920 | Gene3D | - | 142 | 416 | - | - | |
Lcy8g1443 | 920 | SMART | GluR_14 | 463 | 817 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy8g1443 | 920 | CDD | GluR_Plant | 462 | 815 | - | - | |
Lcy8g1443 | 920 | Gene3D | - | 45 | 392 | - | - | |
Lcy8g1443 | 920 | PRINTS | NMDA receptor signature | 838 | 862 | IPR001508 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro) | |
Lcy8g1443 | 920 | PRINTS | NMDA receptor signature | 587 | 612 | IPR001508 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro) | |
Lcy8g1443 | 920 | PRINTS | NMDA receptor signature | 656 | 683 | IPR001508 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro) | |
Lcy8g1443 | 920 | Pfam | Receptor family ligand binding region | 44 | 401 | IPR001828 | - | |
Lcy8g1443 | 920 | CDD | PBP1_GABAb_receptor_plant | 28 | 417 | IPR044440 | - | |
Lcy8g1443 | 920 | Pfam | Ligand-gated ion channel | 585 | 846 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy8g1443 | 920 | FunFam | Glutamate receptor | 459 | 576 | - | - | |
Lcy8g1443 | 920 | FunFam | Glutamate receptor | 576 | 722 | - | - | |
Lcy8g1443 | 920 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 27 | 878 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy8g1443 | 920 | SUPERFAMILY | Periplasmic binding protein-like II | 439 | 815 | - | - | |
Lcy8g1443 | 920 | SUPERFAMILY | Periplasmic binding protein-like I | 20 | 456 | IPR028082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy8g1443 | Lcy-Chr8:41083633 | Lcy9g2339 | Lcy-Chr9:47757741 | 7.26E-308 | dispersed | |
Lcy8g1443 | Lcy-Chr8:41083633 | Lcy8g1444 | Lcy-Chr8:41101731 | 1.25E-299 | tandem | |
Lcy4g0559 | Lcy-Chr4:6845991 | Lcy8g1443 | Lcy-Chr8:41083633 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1443 | K05387 | - | csv:101215715 | 1628.61 |