Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1443 ATGGAGAGCTTATTAATTCTTACATTGATTGGTTGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCGGTTGTGAACATTGGTGCGGTTTTCACTTTTGATTCTGTTATAGGAAGAGCGGCAAAGGTGGCAATGGAAGCTGCAATTTCGGATGTTAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGACGTAGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTACCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATTCCTATCAAATGACTGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGACGAACTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTGCCTTCTCAGTTTAATCTCAGTGAAATCACAGACATACTCAATAAATCCAAGTTGCTTGGTCCTCGTATCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCTCATCAACTTAATATGATGACAAGTGGTTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTGCCCGTGCACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGTCAACATACTCCTGAATCCAGCCGAAAAACAGCATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGGTCCAGAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTTCAATTGATAAGTTTCTTAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAGCAGGTTTCATGATTTAAATACATCTAAAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTTTTCTTTTGAGCATATTGTTGCAGACAAAATTTACTGGTTTAAGTGGTCAGATTGAGTTCAATTCAGATCGGAACATTGTCAATAGAGGCTATGAGTTGATCAATATCGATCAAACTGGATTGCGTAAAGTTGGTTTCTGGTCTAACATCACAGGCTTTGCAATCCAATCACCAGAAACTTTGAAACAGAAACGAATTAGTTATACTCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACTTAGAGTAAGCTTCATTGAATTTGTTACAGCAATCAATGGAAGCGACAAAAACATTGAAGGGTATTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTCCCGTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCCACTCTAATCCTAGTTATAATGACCTTGTGAAGAAAGTTGCAGATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGTACTAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCGAATGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCAGCGTCCTTTTTTATGATTGGCGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTAATAATATCTGAAAATATTTCCATCTTGCAGATTTCTGACTTCACAACTCAAATTACAGAGGAAGATACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACAGCCAATTGGCTATCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTACCTCTAGGCTCTCCCGAAGAGTATGAGTTGGCACTGCTGAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAGTTATTCTTATCAGGGAGGAACGATTTCGGAATGGTCGGGCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTCCAGAGAGGATCTCCACTTGCGATAGACATTTCAACTGCAATTCTAAAGCTATCCGAGAATGGAATGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAAGATGGGCTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTGGTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCACTTTTTATATTTTTGCTCCGCATAGTTCGACAATTCGCTCGCTACATACGACAACAGAAGGAATCTTCTCAGGCAGAGTTGGTATCATCAAATTCAAACTCAAACTGGACTCAGGTTATATATAAGTTTATCGACTTTGTCGATGAGAAGGAAGAGGCCATTAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAACTGA 2763 40.75 MESLLILTLIGWAFLAGSACCQRPAVVNIGAVFTFDSVIGRAAKVAMEAAISDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMTAMAELIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSQFNLSEITDILNKSKLLGPRIYVVHVNPDPRLSIFKIAHQLNMMTSGYVWLATDWLSTTLDSILPVHQTSLNILQGVVVLRQHTPESSRKTALWSRLRKMLPEGSRNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSLKSRFHDLNTSKMPWGKLKIFDDGAFLLSILLQTKFTGLSGQIEFNSDRNIVNRGYELINIDQTGLRKVGFWSNITGFAIQSPETLKQKRISYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPLRVSFIEFVTAINGSDKNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGHSNPSYNDLVKKVADGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILIISENISILQISDFTTQITEEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEQPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYELALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMVGQPFTKSGWGFAFQRGSPLAIDISTAILKLSENGMLQKIHEKWFCKMGCPGERRRKSEPNQLHLVSFWGLYLLCGAFSLAALFIFLLRIVRQFARYIRQQKESSQAELVSSNSNSNWTQVIYKFIDFVDEKEEAIKRLFRKNDTQNQAN 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41083633 41089803 + Maker00000897 Lcy8g1443 640335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1443 920 Gene3D - 576 717 - -
Lcy8g1443 920 Gene3D - 763 822 - -
Lcy8g1443 920 Coils Coil 899 919 - -
Lcy8g1443 920 FunFam Glutamate receptor 711 819 - -
Lcy8g1443 920 Pfam Ligated ion channel L-glutamate- and glycine-binding site 480 567 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1443 920 FunFam Glutamate receptor 142 298 - -
Lcy8g1443 920 Gene3D - 473 575 - -
Lcy8g1443 920 PIRSF IGluLR_plant 1 920 IPR017103 -
Lcy8g1443 920 Gene3D - 142 416 - -
Lcy8g1443 920 SMART GluR_14 463 817 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1443 920 CDD GluR_Plant 462 815 - -
Lcy8g1443 920 Gene3D - 45 392 - -
Lcy8g1443 920 PRINTS NMDA receptor signature 838 862 IPR001508 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro)
Lcy8g1443 920 PRINTS NMDA receptor signature 587 612 IPR001508 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro)
Lcy8g1443 920 PRINTS NMDA receptor signature 656 683 IPR001508 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0038023(InterPro)
Lcy8g1443 920 Pfam Receptor family ligand binding region 44 401 IPR001828 -
Lcy8g1443 920 CDD PBP1_GABAb_receptor_plant 28 417 IPR044440 -
Lcy8g1443 920 Pfam Ligand-gated ion channel 585 846 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1443 920 FunFam Glutamate receptor 459 576 - -
Lcy8g1443 920 FunFam Glutamate receptor 576 722 - -
Lcy8g1443 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 878 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy8g1443 920 SUPERFAMILY Periplasmic binding protein-like II 439 815 - -
Lcy8g1443 920 SUPERFAMILY Periplasmic binding protein-like I 20 456 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1443 Lcy-Chr8:41083633 Lcy9g2339 Lcy-Chr9:47757741 7.26E-308 dispersed
Lcy8g1443 Lcy-Chr8:41083633 Lcy8g1444 Lcy-Chr8:41101731 1.25E-299 tandem
Lcy4g0559 Lcy-Chr4:6845991 Lcy8g1443 Lcy-Chr8:41083633 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1443 K05387 - csv:101215715 1628.61