Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1444 ATGAACCAGGCGGAACCGGGGCGACTGGAGGCTGCAGGGATCGAGCGGAGTCGGTGGGACTCGACCCGCGCAAGTGGGCCGAGGCCGAGCAGGGGGGTCGGGCAAGTGCCCGACCCCTTCGGTCTTGACCCGTCCCATTTGTCGGTTTCGCCTCTGGGGTCCATCTCTCAGCCCTATTTCTGCCCGGTTGTCCTCGTCAGCTCCTTGTACCCGGAACTGAAGAGTATAAGAACAAGAAGTTCAACTTGTATTTTTGCCATTTTTGAGCTCTGTTTTGAACTCCAAACCATTTCTTCTAGAGTTCAGTCTGAAATTTGTGAAGCTGGGCCTTCAGTACATTGGGAATGGGGTTTTGTTGGTAATGCTAAGAAATGTTTGGTGCTACTGAATATTAACCCAACAATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTAAAAACCAGAGTGCTGCTATTTGCATTGTTCTTTTGGATGTGGATGCCTTTGGGAGTGATTGGTGTCTCTCAAAACACAAGTGCTTCTTCTTCAAATCCGAGGGTGTTGAACATTGGAGTTTTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCGTGGACGATGTCAATGCCGATAAAAGCATTCTTCATGGAACAAAGCTGAACATGATCTTACATGACACGAACTGCAGTGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTAATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCCTCGGGCATCGCTCACGTCATATCCCATGTTATTAATGAACTCCATATACCACTTCTATCATTTGGAGCTACAGATCCTACTTTGTCCGCACTACAATACCCGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCCATTGCTGATCTGGTAGATTATTTTAAATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGTGGAATATCAGCACTGAGTGATGCCTTGGCGAAGAAGCGAGCTAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCGCCCACTAGCACGATAAGTGACTTGTTGGTTTCAGTAAACCTCATGGAATCTCGGGTGTATGTTGTACATGTTAACCCTGACACTGGTTTATCAGTATTTTCAATTGCTAAGAAGCTTCAGATGATGGGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAATCCTGATATAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGTCACCACACCCCCGACAGTGATCTGAAGAAAAACTTCGTGTCCAAGTGGAAGAATCTCAAATACAAGAGGAGTTCAAACTTCAACTCTTATGCACTCTTTGCATACGACTCTGTTTGGTTAGCAGCTCGTGCTCTCGACACATTTTTTAAAGAAGGTGGAAATATATCCTTTTCCAGTGACCCAAAGTTACGTGAAAACAATGGAAGCATGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGACGGATTCAATTTGGTGATGACAGAAATTTGATTCATCCAGCCTACGATATTCTGAACATTGGAGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGACAACTTATATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTGTACAGTGTAATATGGCCAGGTGAAGTAACGACCGTTCCTCGAGGATGGGTGTTCCCGCACAACGGGAAACCGTTACAAATTTTAGTACCTAACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAATCCTCCAGGAGTCAAAGGATATTGTATAGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAGCCATCTTGTGTATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGTGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCATTTATGGAGTCGGGACTCGTCGTAGTTACTGTCGTCAAAGAGCAGCAGTCCAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCAAGGCAACAACTAATAACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCATAAGGAAAACACCGTAAGCACCCTTGGACGACTGGTGCTGATAATATGGCTCTTCATTGTGTTAATAATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTGACGTCAAAGATTGAAGGGATTGATAGCTTAATTTCTACCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAACTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAGTTGAAAAATCAAGAGGAATATGTTGATGCTCTTCGGCGTGGACCCGCGAATGGCGGGGTAGCTGCCATTGTAGATGAGCTTCCTTATGTTGAGCTTTTCTTGTCTGGTACCAATTGCGAATACAGGACGGTCGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAGAGGGACTCTCCTCTTGCTGTTGATTTGTCCACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATTCATGACAAATGGCTTTCACGAACCGAGTGTTCGATGAGCCTCAACCAATCCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCCTGCTTTGCTGCTCTTTTGATATTCTTCTTTAGAGTACTACTCCAATATCGAAGATCTACCCCGGAAACTCAGCCTGAAGTCGAGGAGGTCGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACGAGCTTCATGCACTTTGTAGATCAAAAAGAAGTCAAAAAGTCTAGAAGAAAATCCACAGATACCAAACAAGCTAGCCAAAGCTCAGAGAGTTACCATGATTCACCACCTCATTAG 3210 44.02 MNQAEPGRLEAAGIERSRWDSTRASGPRPSRGVGQVPDPFGLDPSHLSVSPLGSISQPYFCPVVLVSSLYPELKSIRTRSSTCIFAIFELCFELQTISSRVQSEICEAGPSVHWEWGFVGNAKKCLVLLNINPTMEVFWIWRSGHWVKTRVLLFALFFWMWMPLGVIGVSQNTSASSSNPRVLNIGVLFTLDSVIGRSAQPAILAAVDDVNADKSILHGTKLNMILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADLVDYFKWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPTSTISDLLVSVNLMESRVYVVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNNPDIMNQLQGVVALRHHTPDSDLKKNFVSKWKNLKYKRSSNFNSYALFAYDSVWLAARALDTFFKEGGNISFSSDPKLRENNGSMLHLTSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPDNLYPKPLNASPNNHLYSVIWPGEVTTVPRGWVFPHNGKPLQILVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSHLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEQQSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFIVLIINSSYTASLTSILTVQQLTSKIEGIDSLISTTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYVDALRRGPANGGVAAIVDELPYVELFLSGTNCEYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQSDVNQLSLSSFWGLFLICGIACFAALLIFFFRVLLQYRRSTPETQPEVEEVEPVRTRRLSRTTSFMHFVDQKEVKKSRRKSTDTKQASQSSESYHDSPPH 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41101731 41107894 + Maker00001131 Lcy8g1444 640336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1444 1069 Gene3D - 611 726 - -
Lcy8g1444 1069 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 184 1048 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy8g1444 1069 Gene3D - 856 962 - -
Lcy8g1444 1069 Gene3D - 298 571 - -
Lcy8g1444 1069 FunFam Glutamate receptor 612 728 - -
Lcy8g1444 1069 Pfam Ligated ion channel L-glutamate- and glycine-binding site 638 719 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1444 1069 FunFam Glutamate receptor 298 460 - -
Lcy8g1444 1069 PIRSF IGluLR_plant 147 1068 IPR017103 -
Lcy8g1444 1069 SMART GluR_14 618 960 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1444 1069 Pfam Ligand-gated ion channel 737 991 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy8g1444 1069 Pfam Receptor family ligand binding region 199 556 IPR001828 -
Lcy8g1444 1069 CDD GluR_Plant 615 958 - -
Lcy8g1444 1069 Gene3D - 202 546 - -
Lcy8g1444 1069 FunFam Glutamate receptor 854 962 - -
Lcy8g1444 1069 SUPERFAMILY Periplasmic binding protein-like I 177 609 IPR028082 -
Lcy8g1444 1069 Gene3D - 727 855 - -
Lcy8g1444 1069 FunFam Glutamate receptor 728 858 - -
Lcy8g1444 1069 SUPERFAMILY Periplasmic binding protein-like II 593 959 - -
Lcy8g1444 1069 MobiDBLite consensus disorder prediction 1 36 - -
Lcy8g1444 1069 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 196 212 - -
Lcy8g1444 1069 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 256 284 - -
Lcy8g1444 1069 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 387 410 - -
Lcy8g1444 1069 CDD PBP1_GABAb_receptor_plant 184 572 IPR044440 -
Lcy8g1444 1069 MobiDBLite consensus disorder prediction 1055 1069 - -
Lcy8g1444 1069 MobiDBLite consensus disorder prediction 1038 1069 - -
Lcy8g1444 1069 MobiDBLite consensus disorder prediction 1038 1054 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0548 Lcy-Chr1:4731970 Lcy8g1444 Lcy-Chr8:41101731 0 dispersed
Lcy2g0236 Lcy-Chr2:1855435 Lcy8g1444 Lcy-Chr8:41101731 6.00E-138 dispersed
Lcy4g0441 Lcy-Chr4:5357307 Lcy8g1444 Lcy-Chr8:41101731 2.48e-310 dispersed
Lcy4g0559 Lcy-Chr4:6845991 Lcy8g1444 Lcy-Chr8:41101731 6.31e-310 dispersed
Lcy8g0809 Lcy-Chr8:29307825 Lcy8g1444 Lcy-Chr8:41101731 1.54E-09 dispersed
Lcy8g1444 Lcy-Chr8:41101731 Lcy9g2339 Lcy-Chr9:47757741 0 dispersed
Lcy8g1443 Lcy-Chr8:41083633 Lcy8g1444 Lcy-Chr8:41101731 1.25E-299 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1444 K05387 - csv:101215485 1655.96