Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1446 ATGCCAGCCGGGATTATGACACCGGCCAGAAACATGCCGCCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGGCTCTACTTCTGGACTTGTTCTTTCTCAGCCAAGCATTTTTGACGACAGTAAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGAAAGCGATCTTGCTCGAATTCGAGACGACGACTTCGACAGCGCCACTAAATCCGGCAGTGACAACAACCATGAACTCGCCTCCGGCGACGATCAGGACCCTCGTCCTAAAAAGAAACGCTACCATCGTCATACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTCTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACCCAACTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAACATGAGATACAGAGAAGCCCTAAGCAATGCCTCATGCCCTAATTGCGGTGGTCCTACCGCCATTGGCGAAATGTCTTTCGACGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTGGGGAAACCAGTGGTGAACTACCCTCTCCTTTCTCCACCAGTTCCATCTCGCCCACTCGAGCTCGGAATGGGCAACTTCGGACCCCAACCAGGCCTCGGAGGAGACATCTATGGCTCGGCCGGTGACCTCATCCGATCCATCAGCGCCCCGACCGAGGCCGATAAGCCGATGATCATCGAGCTCGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACTAGCCTGGATGGGTCCACCAATGTGCTGAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCTTCTCGTGAATCTGCTGTTGTCATCATGAATCATATTAACCTCGTTGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTGTTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTCCAAGTTCCATCGCCACTGGTTCCGACTCGGGAAAGCTACTACGTTAGATACTGCAAACAGCACGCGGACGGGACATGGGCAGTGGTGGATGTTTCATTGGATGATCTGCGCCCTACCCCTGGACTTAGATGCAGAAGAAGACCTTCAGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAGGTTGATGATAGAGGAGTTCATAATCTTTACAAGCAGCTGGTGAGCTCTGGCCAAGCTTTTGGGGCCAAGCGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACCAACATACCTACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGAAAGAGCATGTTGAAGCTGGCTGAGAGGATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACAACCCACACGTGGACTACTCTATCGGGTACGGGTGCGGACGACGTTCGGGTCATGACCCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATCGTCCTGAGTGCCGCAACTTCCTTCTGGCTCCCTGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCCCGCAGCGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATCGCCAACGGACGCGACACTGGCAACTGTGTTTCTCTGCTGCGTGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTACAAGAAAGCTGCACAGACCCAACGGCCTCATTCGTCATCTACGCTCCCGTCGACATCGTCGCAATGAACGTCGTCCTCAACGGCGGCGACCCCGACTACGTGGCACTTCTCCCCTCCGGCTTCGCTATCCTCCCCGACGGCGGCGGCGGAGAGACCGTCTCCGGTGGTGGGTCCCTCCTGACGGTTGCGTTTCAGATTCTGGTGGACTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTGGCAACGGTCAACAACCTGATTGCGTGTACGGTGGAGAGGATCAAAGCGTCGTTGTCATGCGAGACTGGTTAA 2274 51.32 MPAGIMTPARNMPPMIGRNGNNVGGFGSTSGLVLSQPSIFDDSKLLPLDMPQNTSESDLARIRDDDFDSATKSGSDNNHELASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTNVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGETVSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETG 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41124241 41130350 - Maker00001240 Lcy8g1446 640338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1446 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Lcy8g1446 757 SUPERFAMILY Bet v1-like 274 505 - -
Lcy8g1446 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 755 IPR042160 -
Lcy8g1446 757 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Lcy8g1446 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy8g1446 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677(InterPro)
Lcy8g1446 757 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Lcy8g1446 757 SUPERFAMILY Bet v1-like 522 749 - -
Lcy8g1446 757 FunFam Homeobox-leucine zipper protein HDG1 78 166 - -
Lcy8g1446 757 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Lcy8g1446 757 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Lcy8g1446 757 Gene3D - 333 502 IPR023393 -
Lcy8g1446 757 Gene3D - 79 167 - -
Lcy8g1446 757 Coils Coil 144 176 - -
Lcy8g1446 757 MobiDBLite consensus disorder prediction 58 92 - -
Lcy8g1446 757 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Lcy8g1446 757 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Lcy8g1446 757 MobiDBLite consensus disorder prediction 1 22 - -
Lcy8g1446 757 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Lcy8g1446 757 CDD START_ArGLABRA2_like 278 502 - -
Lcy8g1446 757 MobiDBLite consensus disorder prediction 45 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1940 Lcy-Chr11:43090776 Lcy8g1446 Lcy-Chr8:41124241 6.48E-201 dispersed
Lcy13g0637 Lcy-Chr13:8674854 Lcy8g1446 Lcy-Chr8:41124241 2.65E-274 dispersed
Lcy5g2008 Lcy-Chr5:43070878 Lcy8g1446 Lcy-Chr8:41124241 6.61E-306 dispersed
Lcy5g2591 Lcy-Chr5:48565640 Lcy8g1446 Lcy-Chr8:41124241 4.52E-147 dispersed
Lcy6g0182 Lcy-Chr6:1654579 Lcy8g1446 Lcy-Chr8:41124241 4.36E-227 dispersed
Lcy1g0431 Lcy-Chr1:3811227 Lcy8g1446 Lcy-Chr8:41124241 0 wgd
Lcy4g0564 Lcy-Chr4:6910018 Lcy8g1446 Lcy-Chr8:41124241 0 wgd
Lcy8g1446 Lcy-Chr8:41124241 Lcy9g1213 Lcy-Chr9:36514873 6.10E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20531 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1446 K09338 - csv:101214763 1427.15