Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1452 ATGAAAATGGGGCGGCTTACTTCTTTGGTGTTGGCCACTATAGTTGGTCTTCTAGGCCTGATAGGCTCCACTCAAGCTCAGTTGCAGCTTGGTTTCTATGCCAAAAGCTGCCCAAACGCTGAGAAAATCGTCTTAGATTTCGTTCACCAGCATATCCACAATGCCCCTTCACTGGCGGCAACTTTCATTAGAATGCACTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTTTGCTGATAAATACCACCTCAAATAACCAAGCTGAGAAGGATTCTGCACCAAATCGAACACTCAGAGGCTTTGACTTCCTTGATAGAGTCAAAAGCTTACTTGAAGCTGAATGCCCTGGAGTTGTGTCCTGCGCAGATGTTCTTTCCTTGGTTGCGAGAGATACCATTGTAGCCACAGGAGGTCCTTACTGGGAAGTTCCAACTGGCCGAAGGGATGGAGTGATCTCAAGGGCATCAGAAACTAACTCCATTCCTCCTCCATTTGCAAACTTCACAACACTCCAAACACTTTTCGCAAACCAAGGCCTTGATCTTAAAGACTTGGTCTTGCTATCTGGCGCTCACACAATCGGCATAGCACATTGCTCGTCATTCAGAAACCGACTCTACAACTTCACCGGCGTCGGCGACCAAGACCCCTCCCTCGACCCCAGATACGCCGCTAATCTCAAGGCCAACAAATGCAAGACTCCCACCGACAACAGCAAAGTGGAAATGGACCCAGGAAGCCGCAACACTTTTGACCTCAGCTACTACTCTCTTCTCCTCAAAAGAAGGGGCCTTTTCGAATCCGACGCTGCTCTAACTAAAGACGCAACTACATTGGCTCTAGTTCAGAAGCTCGTTCAAGGACCCATTGAAGAGTTCTTCGCTGAATTTGCAGCGTCCATGGAGAAACTGGGTCGGATTAAAGTGAAAACTGGCACTGAAGGTGAAATCAGAAGAAGATGCGCTGTGGTGAATAGTTAA 984 47.76 MKMGRLTSLVLATIVGLLGLIGSTQAQLQLGFYAKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDASLLINTTSNNQAEKDSAPNRTLRGFDFLDRVKSLLEAECPGVVSCADVLSLVARDTIVATGGPYWEVPTGRRDGVISRASETNSIPPPFANFTTLQTLFANQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPSLDPRYAANLKANKCKTPTDNSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALTKDATTLALVQKLVQGPIEEFFAEFAASMEKLGRIKVKTGTEGEIRRRCAVVNS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41193682 41195636 + Maker00000788 Lcy8g1452 640344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1452 327 Gene3D - 31 326 - -
Lcy8g1452 327 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PANTHER PEROXIDASE 25-RELATED 23 322 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy8g1452 327 CDD secretory_peroxidase 27 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g1452 327 Gene3D Peroxidase, domain 2 163 305 - -
Lcy8g1452 327 SUPERFAMILY Heme-dependent peroxidases 27 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lcy8g1452 327 FunFam Peroxidase 163 305 - -
Lcy8g1452 327 Pfam Peroxidase 46 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 FunFam Peroxidase 31 174 - -
Lcy8g1452 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1452 327 ProSiteProfiles Plant heme peroxidase family profile. 27 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0571 Lcy-Chr4:6973599 Lcy8g1452 Lcy-Chr8:41193682 2.47E-157 dispersed
Lcy4g0572 Lcy-Chr4:6985052 Lcy8g1452 Lcy-Chr8:41193682 7.58E-147 dispersed
Lcy6g0205 Lcy-Chr6:1839494 Lcy8g1452 Lcy-Chr8:41193682 4.60E-88 dispersed
Lcy8g1452 Lcy-Chr8:41193682 Lcy8g2142 Lcy-Chr8:47576073 4.10E-77 dispersed
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g1452 Lcy-Chr8:41193682 1.99E-77 wgd
Lcy4g0570 Lcy-Chr4:6967612 Lcy8g1452 Lcy-Chr8:41193682 1.32E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1452 K00430 - csv:101213629 587.415