Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1461 ATGGATTACTCTGCCGGCAACTTGAACTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCTCCGGCCACTTCTCGCCGCCGCAGTCCATCAGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGATTCAAAGCATTCCACCTGGAGGTAGACTGCTCGTATGGAGATCTGGACAGCTTACAGGAAGTGGGTCGGAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTTCCTCTAAAGCATGCAGAGAGAAATTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACAGATAAGGTTGCAATCTTGAGTGATGCTGTCAGAATGTTAACTGATTTACAATGTGAAACCCAGAAGCTGAAAGAATCGAAAGAGGATCTGAAGGCAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGCATTTAATACTCGAGCAGCTGACATCCATCATCCTCCCCCTACATTGTCAGCTGCATTCACGGCACAAGGGCAAGCTGCTGGGAACAAGCTAATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCAGTTGACATATCTCAGGATCATGTGCTCCGCCCACCAGTTGCTTAA 732 46.86 MDYSAGNLNWLFDYSTMDDLAVASGHFSPPQSISFSWSNPSINFSSKDRFKAFHLEVDCSYGDLDSLQEVGRKRPRAETSAASSSKACREKLRRDKLNERFLELAAVLEPGKPPKTDKVAILSDAVRMLTDLQCETQKLKESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKAFNTRAADIHHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41267529 41271154 - Maker00001332 Lcy8g1461 640353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1461 243 Gene3D arf6 gtpase in complex with a specific effector, jip4 131 185 - -
Lcy8g1461 243 CDD bHLH_AtILR3_like 86 161 - -
Lcy8g1461 243 Pfam Helix-loop-helix DNA-binding domain 85 133 IPR011598 GO:0046983(InterPro)
Lcy8g1461 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 151 IPR036638 GO:0046983(InterPro)
Lcy8g1461 243 FunFam Transcription factor bHLH34 72 130 - -
Lcy8g1461 243 PANTHER BHLH TRANSCRIPTION FACTOR 9 243 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lcy8g1461 243 SMART finulus 87 138 IPR011598 GO:0046983(InterPro)
Lcy8g1461 243 Coils Coil 129 184 - -
Lcy8g1461 243 Gene3D - 72 130 IPR036638 GO:0046983(InterPro)
Lcy8g1461 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1353 Lcy-Chr6:18984908 Lcy8g1461 Lcy-Chr8:41267529 2.13E-54 dispersed
Lcy11g1655 Lcy-Chr11:40403124 Lcy8g1461 Lcy-Chr8:41267529 1.41E-20 transposed
Lcy5g1978 Lcy-Chr5:42725913 Lcy8g1461 Lcy-Chr8:41267529 4.94E-32 wgd
Lcy8g1461 Lcy-Chr8:41267529 Lcy9g1226 Lcy-Chr9:36715435 7.52E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20534 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1461 - - - 0.0