Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1467 ATGCGGTCCTGGTCCAATCTAAACATTTCTTGGATGCCTAAATTAGAAAAATTACAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTAGGTACATTTCCATCTGCCATCGATGCTGCTCTTGCTTACGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAATATCTCAATCCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCTCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTAAGTCTGAGTTCCGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGTTGAAGATGTCTAG 573 44.85 MRSWSNLNISWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAVEDV 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41304585 41306742 + Maker00000780 Lcy8g1467 640359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1467 190 MobiDBLite consensus disorder prediction 144 190 - -
Lcy8g1467 190 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 CDD AP2 76 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 MobiDBLite consensus disorder prediction 154 181 - -
Lcy8g1467 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 179 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Lcy8g1467 190 SMART rav1_2 77 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Lcy8g1467 190 Pfam AP2 domain 77 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1467 190 SUPERFAMILY DNA-binding domain 77 134 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2181 Lcy-Chr10:45738477 Lcy8g1467 Lcy-Chr8:41304585 1.95E-57 dispersed
Lcy8g1467 Lcy-Chr8:41304585 Lcy8g1527 Lcy-Chr8:41917660 9.03E-20 dispersed
Lcy9g2232 Lcy-Chr9:46876695 Lcy8g1467 Lcy-Chr8:41304585 1.57E-35 transposed
Lcy1g0995 Lcy-Chr1:8848747 Lcy8g1467 Lcy-Chr8:41304585 1.08E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20535 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1467 - - - 0.0