Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1467 | ATGCGGTCCTGGTCCAATCTAAACATTTCTTGGATGCCTAAATTAGAAAAATTACAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTAGGTACATTTCCATCTGCCATCGATGCTGCTCTTGCTTACGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAATATCTCAATCCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCTCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTAAGTCTGAGTTCCGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGTTGAAGATGTCTAG | 573 | 44.85 | MRSWSNLNISWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAVEDV | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 41304585 | 41306742 | + | Maker00000780 | Lcy8g1467 | 640359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1467 | 190 | MobiDBLite | consensus disorder prediction | 144 | 190 | - | - | |
Lcy8g1467 | 190 | ProSiteProfiles | AP2/ERF domain profile. | 77 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | CDD | AP2 | 76 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | Gene3D | AP2/ERF domain | 77 | 135 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | MobiDBLite | consensus disorder prediction | 154 | 181 | - | - | |
Lcy8g1467 | 190 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 17 | 179 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Lcy8g1467 | 190 | SMART | rav1_2 | 77 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | FunFam | Ethylene-responsive transcription factor 2 | 76 | 135 | - | - | |
Lcy8g1467 | 190 | Pfam | AP2 domain | 77 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | PRINTS | Ethylene responsive element binding protein signature | 78 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | PRINTS | Ethylene responsive element binding protein signature | 100 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy8g1467 | 190 | SUPERFAMILY | DNA-binding domain | 77 | 134 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2181 | Lcy-Chr10:45738477 | Lcy8g1467 | Lcy-Chr8:41304585 | 1.95E-57 | dispersed | |
Lcy8g1467 | Lcy-Chr8:41304585 | Lcy8g1527 | Lcy-Chr8:41917660 | 9.03E-20 | dispersed | |
Lcy9g2232 | Lcy-Chr9:46876695 | Lcy8g1467 | Lcy-Chr8:41304585 | 1.57E-35 | transposed | |
Lcy1g0995 | Lcy-Chr1:8848747 | Lcy8g1467 | Lcy-Chr8:41304585 | 1.08E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20535 | None | None | None | None | Lcy | TF |
Pathway information
