Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1504 ATGAGATGGAATTCCTTCTACACCAGAGCCTCCAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATCATTTTCACTGTCAGTGGAGGTGGACTGGTGGCAGCTACTAATGGAAAATCTCTGTATCATTCTGCATATGCTGATGCAGTCCGACGAGATGGTGACTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACCTTAAGAGCTCTTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGTGGCAATGTCGAGGCACGCAGCATTGTCGAACCAATTCGTACGATTGCAAAGAAGAAAGGTTTGGATATTGAATTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAGAAGACGGTGTTCTGTCGATCAAGGCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTGGACTATGACTATTTGATAATAGCCATGGGAGCTAAATCCAACACTTTCAATACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAAACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGAGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGATTTTGCAGTTGAGGATTTAGCTTTATTGTATCCTTCTTTGAAAGACTATGTGAAGATTACCCTCCTAGAGGCAGGGGATCATATTTTGAACATGTTTGACAAGAGGATTACTGCTTTTGCTGAAGAAAAATTTCGAAGAGAGGGGATTAATTTAAAAACTGGTTCCATGGTTGTAAAAGTTACTGATAAGGAGATCTCCACCAAAGAAAGTGCCACTGGTGAATTTGTGTCTGTTCCTTATGGAATGGTCATCTGGTCCACCGGCATCGGCCCTCGGCCTCAAATTGTCGATTTCATGAAGCAGATCGGTCAGACTAACAGAAGAGCTTTGGCGACTGATGAATGGCTAAGGGTTGAAGGATGTGATGATGTCTATGCTCTTGGTGATTGTGCAACCATAAATCAAAGAAGAGTCATGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACACAATCAGACGAACAGAAACAGTCGACCGAGCTCGATATTGAAAGCTTTAAGTCCTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTGCCTGCTACTGCTCAAGTTGCTGCACAACAAGGTGAATATCTTGCAAGCTGCTTCAACAGGATGGAACTATGTGAAAAGTACCCTGAAGGTCCTCTCCGATTTAGAGGGACGGGACGACATCGGTTTCATCCCTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCACTGGGGGGAGAACAAGCTGCAGCTCAACTACCAGGAGATTGGATCTCAATAGGTCATAGCACCCAGTGGCTTTGGTACTCAGTGTATGCAAGCAAACTAGTAAGCTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATTTTTGGCAGGGATTCAAGCAGAATCTAA 1632 43.81 MRWNSFYTRASKAFHDHPSISKLLIIFTVSGGGLVAATNGKSLYHSAYADAVRRDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGNVEARSIVEPIRTIAKKKGLDIEFREAECYKIDAEKKTVFCRSRQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLALLYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFRREGINLKTGSMVVKVTDKEISTKESATGEFVSVPYGMVIWSTGIGPRPQIVDFMKQIGQTNRRALATDEWLRVEGCDDVYALGDCATINQRRVMKKQMKNFAALLKKTQSDEQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMELCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQAAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41716806 41721535 - Maker00000826 Lcy8g1504 640396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1504 543 Gene3D - 52 421 - -
Lcy8g1504 543 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 388 IPR023753 GO:0016491(InterPro)
Lcy8g1504 543 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Lcy8g1504 543 PANTHER NADH DEHYDROGENASE 47 543 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Lcy8g1504 543 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Lcy8g1504 543 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Lcy8g1504 543 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Lcy8g1504 543 Pfam NDH2 C-terminal domain 478 539 IPR054585 -
Lcy8g1504 543 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 52 417 - -
Lcy8g1504 543 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0375 Lcy-Chr1:3340754 Lcy8g1504 Lcy-Chr8:41716806 5.81E-88 dispersed
Lcy8g1504 Lcy-Chr8:41716806 Lcy8g1736 Lcy-Chr8:43853081 1.96E-75 dispersed
Lcy4g0618 Lcy-Chr4:7387671 Lcy8g1504 Lcy-Chr8:41716806 3.31E-249 wgd
Lcy5g1939 Lcy-Chr5:42207229 Lcy8g1504 Lcy-Chr8:41716806 2.89E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1504 K03885 - csv:101209855 1018.84