Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1522 ATGGGGAGTTGTGTGTCTACGGGCATTCAGATTAATTGCAATGGTAGAAGCAATGGAGAGAGAGTTTCTATATCCTGTTTGGGAAATGGAGGTTGTGGCCAGATTGAAAGAAAGAGAACATTCTCAGATCATTTTTTTTCTCTCCAGCATTTGAATTCAATACCTAATAGACTTGTCTCCAATGGAAAGACTCGAAATTCTTGCATTTTCACTCAGCAGGGTCGAAAGGGTATAAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGACGGTGCAATTTTCTGTGGGGTATTTGATGGTCATGGTCCACATGGTCATGTCGTTGCACGAAAGGTTAGAGATGTTCTGCCAAGAAAGCTGGTGTCATTCTGGCAGTCATCTCAGTTGAAGCATAAGAGATCAAATAGAACTTCTTGTCTTCGGTGGAAACGGAAGAATTCAACAGATGGTGAAGGACAGGGCACGGATGGTTCACTGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTCATCCCAAAGTGGACTGTTTCTGTAGTGGCAGTACGGCGGTAACTCTAGTGAAGCAGGGTTCAGATCTATTCGTAGGAAGTATTGGGGATTCTCGAGCAATTCTTGGATCTAAAGACAGCAGTGGTTCCCTTGTAGCAACCCAATTGACAGTAGATCTAAAGCCTGATTTGCCTAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTATTTGCATTGCAAGATGAGCCAGAAGTGCCAAGAGTGTGGCTTCCATTTGACAACGCCCCCGGATTAGCCATGGCTCGAGCATTTGGTGACTTCTGTTTGAAGGACTATGGAGTTATCTCCATTCCCGAGTTCTCACACCGCGTGCTTACAGATAATGATCTGTTCGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAATGAAGAGGTGGTTGAGATAGTGTATTCTGCCTCAACTCGGTCATCAGCAGCTCGAATGCTGGTAGACTCAGCTGGTCGTGAGTGGAAGCTCAAGTACCCTAATTCAAAAATGGATGACTGTGCAGTCGTATGCCTATTCTTAGACGGGAAAATGGATTCAGAATCAGAAAATGAAGAACAAACTTGTTCTGAAACTCCTCAAGCCAATCAAATGGGTAACACTGCAGATTCAGACGAAGAGCAGAAGACTGAGCCAAGTTTGCAAAGGAATTACACGGTCCGATCGTCGGACGAAAAGGACCAAATTGGAGGATTATCTCCACATGGTGAAGAGAATGGACAATCAACGTCTGCTGAAGATGAGAATTGGTTGGGATTGGAGGGTGTAACAAGAGTAAACTCTCTGGTTCATCTACCTAGATTTTCTTGA 1407 43.92 MGSCVSTGIQINCNGRSNGERVSISCLGNGGCGQIERKRTFSDHFFSLQHLNSIPNRLVSNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKHKRSNRTSCLRWKRKNSTDGEGQGTDGSLEDKSSSLWRRAFLKSYKAMDKELKSHPKVDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSGSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTDNDLFVVLASDGVWDVLSNEEVVEIVYSASTRSSAARMLVDSAGREWKLKYPNSKMDDCAVVCLFLDGKMDSESENEEQTCSETPQANQMGNTADSDEEQKTEPSLQRNYTVRSSDEKDQIGGLSPHGEENGQSTSAEDENWLGLEGVTRVNSLVHLPRFS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41844103 41847456 - Maker00001406 Lcy8g1522 640414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1522 468 FunFam probable protein phosphatase 2C 52 57 376 - -
Lcy8g1522 468 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Lcy8g1522 468 MobiDBLite consensus disorder prediction 144 163 - -
Lcy8g1522 468 MobiDBLite consensus disorder prediction 381 450 - -
Lcy8g1522 468 CDD PP2Cc 72 373 IPR001932 -
Lcy8g1522 468 SUPERFAMILY PP2C-like 56 375 IPR036457 -
Lcy8g1522 468 SMART PP2C_4 55 371 IPR001932 -
Lcy8g1522 468 Pfam Protein phosphatase 2C 168 350 IPR001932 -
Lcy8g1522 468 Gene3D - 55 375 IPR036457 -
Lcy8g1522 468 MobiDBLite consensus disorder prediction 386 402 - -
Lcy8g1522 468 PANTHER PROTEIN PHOSPHATASE 67 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1596 Lcy-Chr1:16023821 Lcy8g1522 Lcy-Chr8:41844103 1.51E-90 dispersed
Lcy4g1251 Lcy-Chr4:28606587 Lcy8g1522 Lcy-Chr8:41844103 4.37E-137 dispersed
Lcy4g1812 Lcy-Chr4:44155899 Lcy8g1522 Lcy-Chr8:41844103 1.49E-93 dispersed
Lcy6g1955 Lcy-Chr6:41457980 Lcy8g1522 Lcy-Chr8:41844103 9.61E-37 dispersed
Lcy6g1957 Lcy-Chr6:41474195 Lcy8g1522 Lcy-Chr8:41844103 7.75E-48 dispersed
Lcy8g1268 Lcy-Chr8:39272682 Lcy8g1522 Lcy-Chr8:41844103 1.22E-10 dispersed
Lcy8g1522 Lcy-Chr8:41844103 Lcy9g1989 Lcy-Chr9:44765427 2.23E-91 dispersed
Lcy4g0630 Lcy-Chr4:7493870 Lcy8g1522 Lcy-Chr8:41844103 6.30E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1522 - - - 0.0