Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1533 CCTTCACCTTCAGAATCTGCAGCAGCTTATACTGGTGCTCCAACAAAAACCGTCGGCCAGACTCTCCAATCCTCTCTCTCAACTGTTTTTCTCGGTCACTGTGCTCGCCGGAAACTGACATTGTCGGCGGAGCAAGCGGTGTCGCCGCCTACGCACACGCAAATGCAGCTCCTCCTCCGCCGCCGTGGTTTTGGCCTCGTTGGGGCTTTTTTCTTTGCCACGGCTGTGCTCGAGTGGTTCACTGCGGCGGCTCAGCCCCAACACCATGTGCCGGATCTACATTGGCTTCCGGCCACCGCCACGTGGTATGGAAGTCCCGAGGGCGACGGTAGCGACGGTGGAGCTTGTGGGTACGGAAATTTAGTGGATGTGAGGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTCTGTTCAGAAATGGTGAAGGGTGTGGAGCATGTTACAAAGTGAAATGCCTAGACCATAGCATTTGCTCTAGACGAGCCGTTACTATAATCGTCACCGACGAGTGTCCCGGCGGGTATTGTTCTAATGGCAATACTCATTTCGATCTCAGCGGCGCTGCCTTTGGCCGTATGGCCATCACCGGCGAAGGCGGGCAGCTCCGGAACCGAGGCGAAATCCCAGTAATTTACCGACGGTATAGATTCGTTGCAACTCTGACTCCATGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACGGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGATGGAGACGGGGACATCGGCGCAATGCAAATAAAAGAAGAAAGGGGGAGCTGTGAAATTTTGTTGACTAGTTTTTTCTTTCTGTTCCCACAACAACAATGGCAGGCAAATTCGGAGGAGTGGCTGGATATGAACCATTTATGGGGAGCAAATTGGTGCATTATTGGTGGGCCTTTGAAGGGCCCATTCTCAGTGAGATTAACAACATTATCTACAGGAAGAAGCCTCTCAGCGAGGGACATAATTCCAAGGAATTGGTCTCCAAAAGCCACATACACTTCCCGCCTTAATTTCTTCTCTTAA 1059 51.75 PSPSESAAAYTGAPTKTVGQTLQSSLSTVFLGHCARRKLTLSAEQAVSPPTHTQMQLLLRRRGFGLVGAFFFATAVLEWFTAAAQPQHHVPDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPLKARVGAVSPVLFRNGEGCGACYKVKCLDHSICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRYRFVATLTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKEERGSCEILLTSFFFLFPQQQWQANSEEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41943956 41945654 - Maker00000264 Lcy8g1533 640425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1533 352 CDD DPBB_EXPB_N 95 215 - -
Lcy8g1533 352 Pfam Lytic transglycolase 133 211 IPR009009 -
Lcy8g1533 352 PANTHER EXPANSIN-B3 79 350 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Lcy8g1533 352 FunFam Expansin B3 81 219 - -
Lcy8g1533 352 SUPERFAMILY PHL pollen allergen 230 346 IPR036749 -
Lcy8g1533 352 SUPERFAMILY Barwin-like endoglucanases 94 216 IPR036908 -
Lcy8g1533 352 PRINTS Major pollen allergen Lol pI signature 234 249 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy8g1533 352 PRINTS Major pollen allergen Lol pI signature 133 144 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy8g1533 352 PRINTS Major pollen allergen Lol pI signature 250 265 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy8g1533 352 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 243 346 IPR007117 -
Lcy8g1533 352 SMART dpbb_1 131 213 IPR007112 -
Lcy8g1533 352 PRINTS Expansin/Lol pI family signature 112 130 IPR007118 GO:0005576(InterPro)
Lcy8g1533 352 PRINTS Expansin/Lol pI family signature 206 222 IPR007118 GO:0005576(InterPro)
Lcy8g1533 352 PRINTS Expansin/Lol pI family signature 135 153 IPR007118 GO:0005576(InterPro)
Lcy8g1533 352 PRINTS Expansin/Lol pI family signature 94 109 IPR007118 GO:0005576(InterPro)
Lcy8g1533 352 Pfam Expansin C-terminal domain 232 335 IPR007117 -
Lcy8g1533 352 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 113 215 IPR007112 -
Lcy8g1533 352 Gene3D - 81 217 IPR036908 -
Lcy8g1533 352 Gene3D - 227 351 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2114 Lcy-Chr11:44600080 Lcy8g1533 Lcy-Chr8:41943956 9.97E-72 dispersed
Lcy4g0636 Lcy-Chr4:7569037 Lcy8g1533 Lcy-Chr8:41943956 2.18E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1533 K20628 - csv:101202998 487.263