Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1543 | ATGGGCTGTATCTGTTCGAAGGTTTTCGCGGATGAGTGTAGTAACCATGAACACGATAGCTCCAAAAGAGCTTATTCCTCCAGAAATCAGCTCTCTGAATTGAAAATTTCGAGAGCTGGCTGTTCGAAATCGGAGAAGATTTGGGAAAAAGATAGACTGGACTGTGGTGATGTTAAGGTTATGTTGTTCGATACGAAGGCGAATGGTCCTCTGTGCTCACATGGTGAACTTCCTAATGAGAGGCAGAAGACAGACATCCCTGATGTCACCATTTTCAACCATCCATGTATGGGAAAGATTCCAAAGGCTACCGAGGCCGAGCAGGTTGCTGCTGGGTGGCCGAGTTGGCTAGCCGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAAAAGATTGGTCAGGGAACTTACAGTAGTGTGTATAAAGCTCGCGATATCATTCAGGATAAAGTTGTGGCCTTGAAAAGGGTCAGATTCGACAATAAAGATAACGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGCGAAGGCTTAATCATCCAAATATAGTTAAGTTGGAAGGCTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGGCTTGCATCACGGCCTGGCACGTCGTTCACCGAATCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCACTGTCACAGTAATGGGGTTCTGCATCGAGACATAAAGGGCTCAAACCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGTTTGGCCGTTTTCTTTGATTCACAGTCAACAGTTCCAATGACAAGTCGTGTAATAACTCTCTGGTATCGACCGCCCGAACTTTTACTTGGAGCATCTCATTATGGACCTGAAATTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAGTTATATGCCGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTGCATAAAATATTTAAGCTATGTGGTTCCCCCTCTAAGGAATATTGGAGCAAATTGCATTTGAAGCATTCAACAAGCATGAAGCCTCCACAGTCGTATGAAAGATGTCTTCGAGAAAGCTTTAACGATTTTCCTCGTGCTGCTGTTGAGCTTATGGATACTTTGCTGTCTATAGATCCTGCTGGGCGAGGAACTGCAGCTTCGGCACTCGACAGTGAGTTCTTTACCGCAAGGCCCTTACCATGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATTGATTCAAAAATGCGAGAAGAGGAAGCAAGAAGGCAACGAGGAGTAGGTGGTGGGAAAAGCCGACCAATTGGCTCAGAAGCAAAAGGACTGAAGCAATCTCGGGTAGTTCCTGCAAAGGCTAACGCTGAGTTGGTTTTATCACTACTGAGAAAACAAAGTCGTTCGAGCTCGAAGTACCGGAGTGAAACCTGTTCTTATGGTTTGGTGTCCAAGAGAACCTCAAATTCAGGACCTATAAGTCAGGGACCAAGGTTTGCAAACTCCAAAAAGGACCCGAAACGTGTTTCTACGATTCCGAGTGAGTATTTAACATCATCTGGTCCTATTGAATTTGTTTCTTACAAGCATATCAAAGAAAGAAATGGAGTTTCAAGGCCAGAATCAAGTCAAGACAAAAATCCTCCTCTATCCAGCTCTGCAGAAGAGTCCATCAAAAAGCTGAACAGAGACCAACTTGATATGGAGAAAAGTACAGGTTCTTGTAAGTTAGAAGATTCAAAAGCCTCAGCTCTGGTAGTTAGCTAA | 1848 | 43.51 | MGCICSKVFADECSNHEHDSSKRAYSSRNQLSELKISRAGCSKSEKIWEKDRLDCGDVKVMLFDTKANGPLCSHGELPNERQKTDIPDVTIFNHPCMGKIPKATEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRVRFDNKDNESIKFMAREILVLRRLNHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGTSFTESQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSQSTVPMTSRVITLWYRPPELLLGASHYGPEIDLWSAGCILGELYAGKPILPGKTEVEQLHKIFKLCGSPSKEYWSKLHLKHSTSMKPPQSYERCLRESFNDFPRAAVELMDTLLSIDPAGRGTAASALDSEFFTARPLPCDPSSLPKYPPSKEIDSKMREEEARRQRGVGGGKSRPIGSEAKGLKQSRVVPAKANAELVLSLLRKQSRSSSKYRSETCSYGLVSKRTSNSGPISQGPRFANSKKDPKRVSTIPSEYLTSSGPIEFVSYKHIKERNGVSRPESSQDKNPPLSSSAEESIKKLNRDQLDMEKSTGSCKLEDSKASALVVS | 615 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42059683 | 42063633 | + | Maker00001385 | Lcy8g1543 | 640435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1543 | 615 | FunFam | probable serine/threonine-protein kinase At1g54610 | 123 | 218 | - | - | |
| Lcy8g1543 | 615 | SUPERFAMILY | Protein kinase-like (PK-like) | 131 | 428 | IPR011009 | - | |
| Lcy8g1543 | 615 | PANTHER | CELL DIVISION PROTEIN KINASE | 136 | 420 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
| Lcy8g1543 | 615 | FunFam | probable serine/threonine-protein kinase At1g54610 | 219 | 460 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 510 | 524 | - | - | |
| Lcy8g1543 | 615 | ProSiteProfiles | Protein kinase domain profile. | 136 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1543 | 615 | ProSitePatterns | Protein kinases ATP-binding region signature. | 142 | 165 | IPR017441 | GO:0005524(InterPro) | |
| Lcy8g1543 | 615 | Gene3D | Transferase(Phosphotransferase) domain 1 | 219 | 458 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 560 | 615 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 439 | 456 | - | - | |
| Lcy8g1543 | 615 | Pfam | Protein kinase domain | 138 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1543 | 615 | SMART | serkin_6 | 136 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1543 | 615 | Gene3D | Phosphorylase Kinase; domain 1 | 123 | 218 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 584 | 603 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 510 | 542 | - | - | |
| Lcy8g1543 | 615 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 256 | 268 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 568 | 583 | - | - | |
| Lcy8g1543 | 615 | CDD | STKc_CDK9_like | 136 | 420 | - | - | |
| Lcy8g1543 | 615 | MobiDBLite | consensus disorder prediction | 428 | 475 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g1543 | Lcy-Chr8:42059683 | Lcy9g0129 | Lcy-Chr9:2818138 | 1.34E-173 | dispersed | |
| Lcy8g1543 | Lcy-Chr8:42059683 | Lcy8g1544 | Lcy-Chr8:42067045 | 3.97E-199 | tandem | |
| Lcy1g0240 | Lcy-Chr1:2179730 | Lcy8g1543 | Lcy-Chr8:42059683 | 1.89E-18 | wgd | |
| Lcy1g0930 | Lcy-Chr1:8122567 | Lcy8g1543 | Lcy-Chr8:42059683 | 1.05E-29 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66124 | None | None | None | None | Lcy | PK |
Pathway information