Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1544 ATGGGTTGCCAATTTTCCAGGCCTTCTGTTGATAAAGATGGCCAGAACAGAGCCACTGAGAAATCTCATTCACAAAAGGCTCAACGAGTTAATTTATCTAGAAAAGAAGAGGATGTGCGATTGAATTCTCTGAAAAGAGACGAAGGTGTTCGAATAAATTCCTCACAGAGAATTGATAGTATTCGATCAAAGGTGAAGACAGATGGAGGTGACATGAAAGTTTCTTATTTGGATAAGAAAGTCAACGGCTCAAACAGGGTACACGATGATCAAATTGAGAAAAAGAAGAGGGAGAGATTGGAAGCAGCCATTTCTACTAATTATCCTGGAAAAGGAAGCATCCCAAAGGCTGTGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCGAGCTGGCTCTCGTCCGTGGCCGGTGAAGCGCTCGAGGGATGGCTGCCACGAAAAGCCGAGACTTTCGAGAAACTAGACAAGATAGGACAAGGGACATATAGTAATGTTTACAAGGCTCGTGATATCATTAACGGTAAACTTGTCGCTCTAAAACGAGTTCGGTTCGATAATCTGGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGGCTTGATCATCAAAATGTTATAAAATTGGAAGGGTTGATTACATCTCCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGATCTTACAGGGCTCGCTTCTCGGCCTGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGACTTGATTATTGTCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTGATCGACGACAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTTGACCCTCGTAATCGTGTTCCCTTAACAAGTCGTGTTGTGACTTTATGGTACCGACCACCCGAACTTCTGCTTGGAGCTTCCCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTTGAACAGTTGCATAAGATATTTAAACTCTGTGGGTCGCCAGCTGAGGATTATTGGAGGAAATTGCAGTTACCTCATTCAGCTGGATTCAAGACAGCTCAGCCATACCGACGTTGTATTGGAGAGATGCTCAAGGATTTCCCATCTGCTGCGGTCGCTCTTGTGGATAAGTTGCTTTCTGTAGATCCTGCTCATCGAGGAACTGCAGCTGCTGCTCTAAAGAGTGAGTTTTTTACGACTAAACCTCTTGCTTGCGAACCTTCGAGTTTGCCCAAATATCCTCCTAGCAAAGAGATCGATGCGAAATTCCACGGCTCCAGAAGGCAGTCAAGAGCTGAAGGCAAAGACCCTAAAGATTATGTGGAAGGAAGGCGTTCTAAAGAAGCACACCTTAATCTTGCTCTCAATGCCAAGGATGAAGCAAACATGTTGATGCAGAAAAGGCAAGGCCATTCAAGTTTGAAGGGCCGGAGCGGAGTGTTCAATCCACGCGGGGACGAAACAGTTTCTGGTTTCTTGATTCCTCCACCCAAACAAAACCAATCTGTCTCAGAAATTTGCTCAGGTACAGGCAGGATTTCACATTCAGGGCCGCTAATTAGCAAACCAGATTGGATGAAATCTGGAATGCAACTCGATGACCATTCGATGGCGCTCGATGGATCGAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGATCTAATACATCTGATCATCCTTACGATAGACCTGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGAGTCGGAGTCAGCGAGAAAGCAAGACCGAATATTTTACACACACCGAGTTGCAGATTCATACCGAGTAGACAATGACAAAGCCTGTGCTAAAGAACAGTCCCTGTTTCCTCATGGGACAGACATGAACAAGCTCTACACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATAAGATTCTGAAAGAGCGAGACCGACAGATTCAAGAATACGCCCGACAAGCACGACACGGTAAAGCTACTAACAGTCAGTTAAAGGGTGCAAGAACAACAACTGGAAAACATCTCATGTCAAGCCATGGAATGTGA 2160 45.23 MGCQFSRPSVDKDGQNRATEKSHSQKAQRVNLSRKEEDVRLNSLKRDEGVRINSSQRIDSIRSKVKTDGGDMKVSYLDKKVNGSNRVHDDQIEKKKRERLEAAISTNYPGKGSIPKAVEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSNVYKARDIINGKLVALKRVRFDNLDVESVKFMAREILILRRLDHQNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPRNRVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPAEDYWRKLQLPHSAGFKTAQPYRRCIGEMLKDFPSAAVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPSSLPKYPPSKEIDAKFHGSRRQSRAEGKDPKDYVEGRRSKEAHLNLALNAKDEANMLMQKRQGHSSLKGRSGVFNPRGDETVSGFLIPPPKQNQSVSEICSGTGRISHSGPLISKPDWMKSGMQLDDHSMALDGSNLSVLSRLVATRSNTSDHPYDRPGPSRSEVGRLPDFVRESESARKQDRIFYTHRVADSYRVDNDKACAKEQSLFPHGTDMNKLYTSGPILGPSNNLDKILKERDRQIQEYARQARHGKATNSQLKGARTTTGKHLMSSHGM 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42067045 42071308 + Maker00001118 Lcy8g1544 640436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1544 719 FunFam probable serine/threonine-protein kinase At1g54610 233 473 - -
Lcy8g1544 719 Gene3D Transferase(Phosphotransferase) domain 1 233 473 - -
Lcy8g1544 719 MobiDBLite consensus disorder prediction 591 611 - -
Lcy8g1544 719 PANTHER CELL DIVISION PROTEIN KINASE 149 434 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy8g1544 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1544 719 MobiDBLite consensus disorder prediction 1 41 - -
Lcy8g1544 719 MobiDBLite consensus disorder prediction 13 41 - -
Lcy8g1544 719 SMART serkin_6 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1544 719 MobiDBLite consensus disorder prediction 693 719 - -
Lcy8g1544 719 CDD STKc_CDK9_like 150 434 - -
Lcy8g1544 719 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524(InterPro)
Lcy8g1544 719 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1544 719 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Lcy8g1544 719 FunFam probable serine/threonine-protein kinase At1g54610 137 232 - -
Lcy8g1544 719 MobiDBLite consensus disorder prediction 690 719 - -
Lcy8g1544 719 MobiDBLite consensus disorder prediction 445 478 - -
Lcy8g1544 719 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Lcy8g1544 719 MobiDBLite consensus disorder prediction 453 478 - -
Lcy8g1544 719 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0602 Lcy-Chr6:5733147 Lcy8g1544 Lcy-Chr8:42067045 1.36E-244 dispersed
Lcy7g1603 Lcy-Chr7:31271690 Lcy8g1544 Lcy-Chr8:42067045 9.75E-62 dispersed
Lcy7g1665 Lcy-Chr7:32912490 Lcy8g1544 Lcy-Chr8:42067045 8.98E-166 dispersed
Lcy8g1544 Lcy-Chr8:42067045 Lcy9g0129 Lcy-Chr9:2818138 2.01E-181 dispersed
Lcy8g1543 Lcy-Chr8:42059683 Lcy8g1544 Lcy-Chr8:42067045 3.97E-199 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66125 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1544 - - - 0.0