Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1549 ATGGGGTCTCGAAGCTTTGCTGGTTTTGTGGCTTTATTGGCTTTACTTGGGGCTATGGCTTGTTCGTCTGAAGCTTACAGATTCTATGTTGGTGGCAGAGATGGCTGGGTTTTGAACCCTTCTGAGACCTTCAATCATTGGGCTGAACGTAATAGGTTTCAAGTCAATGATACTCTTTATTTCAAGTACAAAAACGAGACGGATTCAGTTTTGGTTGTAAGCAAGGACGATTACAATTCATGCAACACCAAAAACCCAATTATTTCTCTAAAAGATGGTGAATCGATCTTCAAATTTGGTCACTCTGGTCCATTTTATTTCATCAGTGGAAATGCCGATGCCTGCCAAAAGGGCCAAAAGCTCATCGTTGTGGTTCTCGCTGTCAGACACAATAATCAACACCACGCTCACCCGCCGTGTTCTTCTTCTCCGGTGCCGCCGCCGTCGCAACCTCAGACCCCAACTGCACAGTCACCGGAGAAACCTGGTTCTCCGGAATCCGGCGTCGCGCCAGTTCCGGCTCCGGCCAAAAGTTCCGCTTTTAGAGGCCCAGTTACATTCAGCTTCTGTCTAGGGATAATCAATGCTGTTCTTGCAAGCGGTTTTTTTGTGGGTTTTCTTTAA 624 46.63 MGSRSFAGFVALLALLGAMACSSEAYRFYVGGRDGWVLNPSETFNHWAERNRFQVNDTLYFKYKNETDSVLVVSKDDYNSCNTKNPIISLKDGESIFKFGHSGPFYFISGNADACQKGQKLIVVVLAVRHNNQHHAHPPCSSSPVPPPSQPQTPTAQSPEKPGSPESGVAPVPAPAKSSAFRGPVTFSFCLGIINAVLASGFFVGFL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42135098 42136796 - Maker00001299 Lcy8g1549 640441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1549 207 SUPERFAMILY Cupredoxins 25 126 IPR008972 -
Lcy8g1549 207 MobiDBLite consensus disorder prediction 134 175 - -
Lcy8g1549 207 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Lcy8g1549 207 PANTHER BLUE COPPER PROTEIN 21 148 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy8g1549 207 MobiDBLite consensus disorder prediction 140 155 - -
Lcy8g1549 207 FunFam Early nodulin-like protein 1 25 130 - -
Lcy8g1549 207 Pfam Plastocyanin-like domain 36 119 IPR003245 GO:0009055(InterPro)
Lcy8g1549 207 ProSiteProfiles Phytocyanin domain profile. 26 127 IPR003245 GO:0009055(InterPro)
Lcy8g1549 207 CDD OsENODL1_like 26 126 IPR041846 -
Lcy8g1549 207 Gene3D - 24 130 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1834 Lcy-Chr13:37323574 Lcy8g1549 Lcy-Chr8:42135098 1.64E-18 dispersed
Lcy10g1876 Lcy-Chr10:42934763 Lcy8g1549 Lcy-Chr8:42135098 2.27E-26 transposed
Lcy5g2445 Lcy-Chr5:47214827 Lcy8g1549 Lcy-Chr8:42135098 5.02E-25 transposed
Lcy6g2292 Lcy-Chr6:47637955 Lcy8g1549 Lcy-Chr8:42135098 2.31E-22 transposed
Lcy9g1218 Lcy-Chr9:36596984 Lcy8g1549 Lcy-Chr8:42135098 1.20E-33 transposed
Lcy8g1549 Lcy-Chr8:42135098 Lcy9g1305 Lcy-Chr9:37782218 5.74E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy8g2041 . 48 263 Phytocyanin Superfamily AT1G08500 54.1 4.6e-56 215.3
Lcy2g1118 . 29 144 Phytocyanin Superfamily AT2G27035 57.8 6.9e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54