Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1549 | ATGGGGTCTCGAAGCTTTGCTGGTTTTGTGGCTTTATTGGCTTTACTTGGGGCTATGGCTTGTTCGTCTGAAGCTTACAGATTCTATGTTGGTGGCAGAGATGGCTGGGTTTTGAACCCTTCTGAGACCTTCAATCATTGGGCTGAACGTAATAGGTTTCAAGTCAATGATACTCTTTATTTCAAGTACAAAAACGAGACGGATTCAGTTTTGGTTGTAAGCAAGGACGATTACAATTCATGCAACACCAAAAACCCAATTATTTCTCTAAAAGATGGTGAATCGATCTTCAAATTTGGTCACTCTGGTCCATTTTATTTCATCAGTGGAAATGCCGATGCCTGCCAAAAGGGCCAAAAGCTCATCGTTGTGGTTCTCGCTGTCAGACACAATAATCAACACCACGCTCACCCGCCGTGTTCTTCTTCTCCGGTGCCGCCGCCGTCGCAACCTCAGACCCCAACTGCACAGTCACCGGAGAAACCTGGTTCTCCGGAATCCGGCGTCGCGCCAGTTCCGGCTCCGGCCAAAAGTTCCGCTTTTAGAGGCCCAGTTACATTCAGCTTCTGTCTAGGGATAATCAATGCTGTTCTTGCAAGCGGTTTTTTTGTGGGTTTTCTTTAA | 624 | 46.63 | MGSRSFAGFVALLALLGAMACSSEAYRFYVGGRDGWVLNPSETFNHWAERNRFQVNDTLYFKYKNETDSVLVVSKDDYNSCNTKNPIISLKDGESIFKFGHSGPFYFISGNADACQKGQKLIVVVLAVRHNNQHHAHPPCSSSPVPPPSQPQTPTAQSPEKPGSPESGVAPVPAPAKSSAFRGPVTFSFCLGIINAVLASGFFVGFL | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42135098 | 42136796 | - | Maker00001299 | Lcy8g1549 | 640441 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1549 | 207 | SUPERFAMILY | Cupredoxins | 25 | 126 | IPR008972 | - | |
| Lcy8g1549 | 207 | MobiDBLite | consensus disorder prediction | 134 | 175 | - | - | |
| Lcy8g1549 | 207 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | - | - | |
| Lcy8g1549 | 207 | PANTHER | BLUE COPPER PROTEIN | 21 | 148 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
| Lcy8g1549 | 207 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
| Lcy8g1549 | 207 | FunFam | Early nodulin-like protein 1 | 25 | 130 | - | - | |
| Lcy8g1549 | 207 | Pfam | Plastocyanin-like domain | 36 | 119 | IPR003245 | GO:0009055(InterPro) | |
| Lcy8g1549 | 207 | ProSiteProfiles | Phytocyanin domain profile. | 26 | 127 | IPR003245 | GO:0009055(InterPro) | |
| Lcy8g1549 | 207 | CDD | OsENODL1_like | 26 | 126 | IPR041846 | - | |
| Lcy8g1549 | 207 | Gene3D | - | 24 | 130 | IPR008972 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1834 | Lcy-Chr13:37323574 | Lcy8g1549 | Lcy-Chr8:42135098 | 1.64E-18 | dispersed | |
| Lcy10g1876 | Lcy-Chr10:42934763 | Lcy8g1549 | Lcy-Chr8:42135098 | 2.27E-26 | transposed | |
| Lcy5g2445 | Lcy-Chr5:47214827 | Lcy8g1549 | Lcy-Chr8:42135098 | 5.02E-25 | transposed | |
| Lcy6g2292 | Lcy-Chr6:47637955 | Lcy8g1549 | Lcy-Chr8:42135098 | 2.31E-22 | transposed | |
| Lcy9g1218 | Lcy-Chr9:36596984 | Lcy8g1549 | Lcy-Chr8:42135098 | 1.20E-33 | transposed | |
| Lcy8g1549 | Lcy-Chr8:42135098 | Lcy9g1305 | Lcy-Chr9:37782218 | 5.74E-44 | wgd |
Pathway information