Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1559 ATGGCTGAGACAAGAATTGATCCTACTGGGCGAAGTAATGAAGGAAGTGATCATGGAGAGGGCTACACCGATTCGCAAAAGTTGACTTCGGCTCGGATGGTAATCGTAGCAAACCAGCTTCCTATAGAAGCAGAACAAAGAGATGACAGAAGTTGGAGTTTCAGATGGGATGAGGATTCTTTCCTTTTCCAATTGGATGATGGTTTACCAGAAGAGATGGTCGTTTTCTATGTTGGATCTCTGAATGTTGACATTCATGAAGATGAACAACAGGAGGTGTCCAAGACATTGCTGGATGAATCCTGCATTCATACATTTTTGCCTCCTGAAATCTTAGATAAGTTTTATCATGGCTTCTGTAAGGGGTATCTGTGGCCTCTTTTCCACTCCATGGAACCTTTCGCTATCGATAAACCGGTTCGGCCTATCTGGAATGCATACATTGCAGCGAATAGGTTGTTTTCTCAAAAGGTAATGGAAGTATGCAACCCAGAACAAGATTATATTTGGATCCATGATTACCATTTAATGGTGCTTTCAAGCTTCTTTAGAGAGAACTATGTTGGGATGAAGATAGGATTTTTCCTTCACATCCCTTTTCCTTCATCTGAGAACTACAGAACTCTTGTTGTAAGAGAAGAAATACTCAAGTGTTTGCTGAACTGTGATGTAATTGGATTCCACAACTATGATTATGCTCGAAATTTCCTTTCGTGTTGCAGCCGAATTCTGGGTCTAAAACATAAGCTAGATAAAGGCTTCCTTGAGCTGGAATATTATGGAAGGAATGTTAGGATAAAAGCTATGCCAGTCGGGATCAATATGGATCGAATCGAGTCGGTGATGAAAAGGGTGGAAGGGGAGTTTCAGGGCATTGAGCTGAAATTGCTTGCAATGGAACACATGCTCAAACAGCATCCGGAAGAGCAGGGAAGAGCCGTATTAGTCCAGATACTGAAACCTGCTATTGGCCAAGGGATACATTATGATAATATGCTATGGAAAATAAAGATAACCTGTGAAATAATAAACAAAACATACGAGGAACCGGGCTATACGCCGATCTATCTGCTTGAACATCAAGTTTGCACCATTGAGAAGTTTGCCTATTATAGCATAGCTGAGTGCCTTGTCGTTACACCTTTAACGAATGGGATGAACCTTTATCCTTATGAATATACTGCCTGCAGAGAGAAGATAACTGGTTTGGGATCATTTGTAAGCAATTACATGGATGATTCGCTGAAACGAATACGACACAGGAAGAACTACGAGCACATTAGCAAGCATGATGTTGTTCACTGGTCAACAAGTTTCTACAAAGACATGGTGAAAACTTGGAAGAATCAATCCTGGAGGGCATTCTCCGGAGTTAACTCCGGCCTTCACTTCAGGGTCGTGTCGGTGGATCCCCGTTTTGAAAAGCTTCCATTAGATACTATGACATTAGACTACATGAAAGCAGAGACTAGAGTCATTCTTTTGGACTATGATGGCACATTGATTTCCATAGACTCTGTAGATAAGTCTCCATGTGAGGAGGTTATCTCAACCCTTGATAATCTTTGTGAGGATACGAGAAATGTAGTTTTCATTGTTAGTGGAAGAGGAAACGACAGCTTAAGCGAGTGGTTCAAGCCTTGCAAAAATCTTGGAATAGCAGCAGAACATGGATTCTTTTTGAGGTGGCCAGGAAATGAAGAATGGGAAACCTTTGGTCAGAGTTCTGATAATATGCATTGGAAGGGGCTAGCCAATTATACCATGGAGTTGTATACTTCGGTTATCGATGGTTCGTTCATTGAAAGGAAAGAGCATGCTTTAGTGTGGAACTATCAGAATGCAGACTCAGAATTTGCATCTTCCCAGGCCAAAGAGCTTTTGGATCACCTAGAAAATATTTTGGCCAATGATCCTGTTACTGTCAAGAGTGGCGAGTTCATTGTAGAAGTAGAATCTCAGGGAGTTAACAAAGGCACAGCTGCAAAGATCCTTGAATCAATGGCCAAGAAAGAAGAGAAAGGGGACAAGTTTATACTGTCCATGGGTGATGACAAATCTGACGAGAATATGTTTGAAATCCTTAATGCAACAGTCAAAGGCAATATTTCATCCATCAATCCAGTTTTCACATGTACTATTGGACAAAAGCCTAACAAAGCCAAGTATTATTTGAAAGATACAGCTGAAGTGATTGACGTTCTTGCACAATTGGCTATGTTGCATCTACTCAAAGAGTGGCAGGATTGA 2250 41.02 MAETRIDPTGRSNEGSDHGEGYTDSQKLTSARMVIVANQLPIEAEQRDDRSWSFRWDEDSFLFQLDDGLPEEMVVFYVGSLNVDIHEDEQQEVSKTLLDESCIHTFLPPEILDKFYHGFCKGYLWPLFHSMEPFAIDKPVRPIWNAYIAANRLFSQKVMEVCNPEQDYIWIHDYHLMVLSSFFRENYVGMKIGFFLHIPFPSSENYRTLVVREEILKCLLNCDVIGFHNYDYARNFLSCCSRILGLKHKLDKGFLELEYYGRNVRIKAMPVGINMDRIESVMKRVEGEFQGIELKLLAMEHMLKQHPEEQGRAVLVQILKPAIGQGIHYDNMLWKIKITCEIINKTYEEPGYTPIYLLEHQVCTIEKFAYYSIAECLVVTPLTNGMNLYPYEYTACREKITGLGSFVSNYMDDSLKRIRHRKNYEHISKHDVVHWSTSFYKDMVKTWKNQSWRAFSGVNSGLHFRVVSVDPRFEKLPLDTMTLDYMKAETRVILLDYDGTLISIDSVDKSPCEEVISTLDNLCEDTRNVVFIVSGRGNDSLSEWFKPCKNLGIAAEHGFFLRWPGNEEWETFGQSSDNMHWKGLANYTMELYTSVIDGSFIERKEHALVWNYQNADSEFASSQAKELLDHLENILANDPVTVKSGEFIVEVESQGVNKGTAAKILESMAKKEEKGDKFILSMGDDKSDENMFEILNATVKGNISSINPVFTCTIGQKPNKAKYYLKDTAEVIDVLAQLAMLHLLKEWQD 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42226385 42229151 - Maker00000730 Lcy8g1559 640451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1559 749 MobiDBLite consensus disorder prediction 1 21 - -
Lcy8g1559 749 FunFam Trehalose-6-phosphate synthase 8 27 280 - -
Lcy8g1559 749 Gene3D Glycogen Phosphorylase B; 286 429 - -
Lcy8g1559 749 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 399 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy8g1559 749 NCBIfam HAD-IIB family hydrolase 493 699 IPR006379 -
Lcy8g1559 749 SUPERFAMILY HAD-like 491 740 IPR036412 -
Lcy8g1559 749 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 621 748 - -
Lcy8g1559 749 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 490 608 - -
Lcy8g1559 749 Pfam Glycosyltransferase family 20 289 401 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy8g1559 749 Pfam Glycosyltransferase family 20 32 284 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy8g1559 749 Pfam Trehalose-phosphatase 494 728 IPR003337 GO:0005992(InterPro)
Lcy8g1559 749 NCBIfam trehalose-phosphatase 489 738 IPR003337 GO:0005992(InterPro)
Lcy8g1559 749 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 32 447 - -
Lcy8g1559 749 Gene3D Glycogen Phosphorylase B; 21 285 - -
Lcy8g1559 749 CDD HAD_TPP 492 731 - -
Lcy8g1559 749 Gene3D - 493 725 IPR023214 -
Lcy8g1559 749 Gene3D - 575 654 - -
Lcy8g1559 749 MobiDBLite consensus disorder prediction 1 25 - -
Lcy8g1559 749 CDD GT20_TPS 32 443 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1119 Lcy-Chr7:12420797 Lcy8g1559 Lcy-Chr8:42226385 8.13E-237 dispersed
Lcy8g1559 Lcy-Chr8:42226385 Lcy9g1399 Lcy-Chr9:39008513 3.38E-52 dispersed
Lcy1g0253 Lcy-Chr1:2266078 Lcy8g1559 Lcy-Chr8:42226385 4.21E-245 wgd
Lcy4g0684 Lcy-Chr4:8257974 Lcy8g1559 Lcy-Chr8:42226385 1.28E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1559 K16055 - csv:101209914 799.66