Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1568 | ATGAAACATGCACACCGGTGTGGTGCTTGGCACACCGCCTCCGATGCTCAAGTTAGCAAGCAGAACGATGGAAGCAAGAGAGCAAAAGCGTTTGGAGGTGATCCAGGGCTGAATCACGTGGAATTGGGACACCAGGGACCAAATGGAGACGGAAGACCTCGGCCCATGGCCGAGGCCGACCATGCCGAGGCCGAGCAGAGGGTTCACGCGGAGGAAGGTGTGGATGTTGGTAAGCCACCCCGTACGCCAGCTGGCTGTCGGAGAGAGGCGTCCGATCCCAGCCCGAACCCCAACTCCTTTCTTCCATTGCACGTGATTCACCATCTCCCTCTTCTCTTTCCCTCTCCACTACTCTCTGGTTTTAGTTTTAGAGAGAGAAACAAACAGTCTCCTCTCCTTCGCTTTCTTCCTTCCTCCATCAATTCTATCAATCAAATCCCCTTCTCCCTTCTCCCTCCTCTCACTCTACCCAATCCTCCAATCCCCGATTTCTATGCCCCCTCACCGGATCAACATTCCAATGCCTTCGATCCGCTCCTGTGCTTATGCCCAGACATTTTGACGCTCCTGTTTCTCGGGTATTATGCCCTCCAGCTTGAAGATATTGGGGGGAGCTTAAGGTTTTTGTCAGTCGTTTTGTTGACTGAGGGTATCTGCATGGAGGATCAGCGAGATGATGTTGCACCATCAGACCAAAGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTGGAGAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGATATTGTAAGTGAAAAAGAAGAGATCATCAATTCTGACCAAGATGCGTTGTTGTCGCCTCAAAGTGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAGAGAGCGGTTCCACAGTATTCCCTCGCTAGACGAGCTTCGTGCTTTGGAGGCTGAAGGTTACAGGAATGATGTTATTCTTGTGGAGACGGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAATTCAAATATAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTGTAGAAGAAACCTCCCACTTGTTTGAGGATAGAGGCATTCAATTGCTTGGACAAATAAAATTTGGTTCATGCCGCCCAAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGGCTAGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCCATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTCATGACCCATGTTTCTGCTGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCACTAGAACCCAATAGTCCTCTTTATGGGTTTTCAGAGAGAATTGATCCTGACAGTGTTGAAAAAGATGAGAGCCTTCAGTTCCACAGAAAATTTGAAGGAGCTTCAAATGCATATGGTCCTTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAATTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAACACCCATCATTCCGGGCGCGTGGTCGGTCCATGCTTAGTGGGGATAGAAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAGAAGTACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATAGTGAGGGCTGTGCGGGCAATGAATGAAACACTAAAGCAAAATCGTCTTTTGAGAGGAGAAGGAGATGACAGGTCGTTCTCCCACCTTTCAAATGAAAGAAATAGTAGTTCAGATGTTCGGAGAAATGTAGGTTTCATTTGTCCTGGAGAGTGGTGGGAGCTCTTCCAATCTCCTGGGTGGGCTTCAGATTTTTTTCCTAACCTTCACCATTTCATCATTAAAACAGTATTTGTTGGATTCCAGTTGGATCCAGTGGGTTCTCAAAGAGCAATATCATTACCCTCATCGCCACATGTGTATAGGGGTCAAACCTCTGGAAGTGAGCGTTCAGCATTTGGGAATGATGATTTAACCTCAAAATGGACTAAAGTTCTTGAATCCTTCTCCTTGAACGACAAACCACTATTACCTTACCCAGAGTGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTGGGTGCATGCACAAAGCCACCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCCTGTATTCCTTGATTCATTTGAGTGATTTGGTTGGATGTCAAAGGGGCTTGATGTGCATACATCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGAGGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTCCGAAACGAACCCTTTACTGAAAAGTGTGATATTTTCAGCCTAGGAGTCATTATGTGGGAGCTCTGCACGCTAAGTCGACCGTGGGAGGGTGTTCCACCGGAGAGGGTAGTTTATGCTGTTGGCACCGAGGGATCCCGCCTAGAGATTCCTGAAGGCCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGAGTACTCCCTTTCTTGA | 3126 | 45.71 | MKHAHRCGAWHTASDAQVSKQNDGSKRAKAFGGDPGLNHVELGHQGPNGDGRPRPMAEADHAEAEQRVHAEEGVDVGKPPRTPAGCRREASDPSPNPNSFLPLHVIHHLPLLFPSPLLSGFSFRERNKQSPLLRFLPSSINSINQIPFSLLPPLTLPNPPIPDFYAPSPDQHSNAFDPLLCLCPDILTLLFLGYYALQLEDIGGSLRFLSVVLLTEGICMEDQRDDVAPSDQRPSNASWWSSDFVEKFGSVSLGPREDIVSEKEEIINSDQDALLSPQSASQILWRTGMLCEPIPDGFYSVIPDKRLRERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLNSNIAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHVSAAGESDSAENDSCDSPLEPNSPLYGFSERIDPDSVEKDESLQFHRKFEGASNAYGPSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSEVRRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGEGDDRSFSHLSNERNSSSDVRRNVGFICPGEWWELFQSPGWASDFFPNLHHFIIKTVFVGFQLDPVGSQRAISLPSSPHVYRGQTSGSERSAFGNDDLTSKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSDLVGCQRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTEAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42310050 | 42320274 | + | Maker00001080 | Lcy8g1568 | 640460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1568 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 804 | 825 | IPR017441 | GO:0005524(InterPro) | |
| Lcy8g1568 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 904 | 916 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1568 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 791 | 876 | - | - | |
| Lcy8g1568 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - | |
| Lcy8g1568 | 1041 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 524 | 1033 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
| Lcy8g1568 | 1041 | SMART | serkin_6 | 798 | 1034 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1568 | 1041 | FunFam | Serine/threonine-protein kinase isoform 1 | 789 | 876 | - | - | |
| Lcy8g1568 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 878 | 1040 | - | - | |
| Lcy8g1568 | 1041 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 278 | 473 | - | - | |
| Lcy8g1568 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 798 | 1040 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1568 | 1041 | CDD | STKc_MAP3K-like | 804 | 1033 | - | - | |
| Lcy8g1568 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 775 | 1033 | IPR011009 | - | |
| Lcy8g1568 | 1041 | Pfam | Protein tyrosine and serine/threonine kinase | 800 | 1033 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1568 | 1041 | MobiDBLite | consensus disorder prediction | 54 | 76 | - | - | |
| Lcy8g1568 | 1041 | MobiDBLite | consensus disorder prediction | 581 | 603 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g2226 | Lcy-Chr5:45283082 | Lcy8g1568 | Lcy-Chr8:42310050 | 2.60E-43 | dispersed | |
| Lcy8g1568 | Lcy-Chr8:42310050 | Lcy9g1979 | Lcy-Chr9:44705340 | 1.87E-65 | dispersed | |
| Lcy8g1568 | Lcy-Chr8:42310050 | Lcy5g0371 | Lcy-Chr5:3734716 | 1.13E-66 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66127 | None | None | None | None | Lcy | PK |
Pathway information