Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1596 | ATGCTGTTCCTAACCAATCCCCTGTTATTTAGTGTTGGAGCATCTTTTGACGGTTTGGAAAACGAAGGAAGTTTGTTTCTGGTGCAGTGTAGATCATCTTGTTGTTCATCACATTTTGATCTCGTGATTTCTGTTTTCCCTTTTTTGGAATCAGATATCTCAGAGGCGCTATGGCGGTTGGAAATCGGTGATAATCAAGACGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATTGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTACAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGCCCATGTGTACAAGGCCAGCAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGACGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAGCACTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACCTGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCGGCAACAAATGCGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAATATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCTTCTGCAACATATCCTTATAATTATGGCTTCACCCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTTACGATGCCCTCACACGAGACCTTGCCCCAGACGTTATCTAAATCTTCTGAATGGGTCCAGAAAGCTGATGCTCCAAACAACAAACGGCGAACTACCGATACAAAAGTTGTAGACGAAACGGCTGAAGAGGCCACCTCAGTTTCATGCTCATTACCACCAGGTGGTTCAGAAACTCTACAAGATCAATCTGGTTGA | 1413 | 44.44 | MLFLTNPLLFSVGASFDGLENEGSLFLVQCRSSCCSSHFDLVISVFPFLESDISEALWRLEIGDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGLCKFGVSCKFNHPQPSPVGNMLPQARPGALGSTGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPVLPNLGYNSVNLDESYSNGQLALSTSTPALPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMPSHETLPQTLSKSSEWVQKADAPNNKRRTTDTKVVDETAEEATSVSCSLPPGGSETLQDQSG | 470 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42569552 | 42573707 | + | Maker00000969 | Lcy8g1596 | 640488 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1596 | 470 | SMART | c3hfinal6 | 122 | 149 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SMART | c3hfinal6 | 169 | 194 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SMART | c3hfinal6 | 80 | 107 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SMART | c3hfinal6 | 310 | 337 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SMART | c3hfinal6 | 353 | 380 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | MobiDBLite | consensus disorder prediction | 417 | 470 | - | - | |
| Lcy8g1596 | 470 | SUPERFAMILY | CCCH zinc finger | 127 | 151 | IPR036855 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 171 | 194 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 81 | 106 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 355 | 379 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 312 | 337 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 125 | 149 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 167 | 195 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SUPERFAMILY | CCCH zinc finger | 356 | 381 | IPR036855 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | SUPERFAMILY | CCCH zinc finger | 314 | 338 | IPR036855 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | MobiDBLite | consensus disorder prediction | 447 | 470 | - | - | |
| Lcy8g1596 | 470 | MobiDBLite | consensus disorder prediction | 429 | 446 | - | - | |
| Lcy8g1596 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 310 | 338 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | PANTHER | PROTEIN PHOSPHATASE RELATED | 69 | 381 | IPR050974 | GO:0003729(PANTHER) | |
| Lcy8g1596 | 470 | SUPERFAMILY | CCCH zinc finger | 166 | 195 | IPR036855 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 353 | 381 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 80 | 108 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Gene3D | - | 152 | 204 | - | - | |
| Lcy8g1596 | 470 | ProSiteProfiles | Zinc finger C3H1-type profile. | 122 | 150 | IPR000571 | GO:0046872(InterPro) | |
| Lcy8g1596 | 470 | Gene3D | - | 77 | 151 | - | - | |
| Lcy8g1596 | 470 | Gene3D | - | 308 | 386 | - | - | |
| Lcy8g1596 | 470 | SUPERFAMILY | CCCH zinc finger | 85 | 107 | IPR036855 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g2161 | Lcy-Chr5:44575018 | Lcy8g1596 | Lcy-Chr8:42569552 | 5.06E-07 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20545 | None | None | None | None | Lcy | TF |
Pathway information