Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1596 ATGCTGTTCCTAACCAATCCCCTGTTATTTAGTGTTGGAGCATCTTTTGACGGTTTGGAAAACGAAGGAAGTTTGTTTCTGGTGCAGTGTAGATCATCTTGTTGTTCATCACATTTTGATCTCGTGATTTCTGTTTTCCCTTTTTTGGAATCAGATATCTCAGAGGCGCTATGGCGGTTGGAAATCGGTGATAATCAAGACGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATTGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTACAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGCCCATGTGTACAAGGCCAGCAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGACGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAGCACTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACCTGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCGGCAACAAATGCGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAATATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCTTCTGCAACATATCCTTATAATTATGGCTTCACCCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTTACGATGCCCTCACACGAGACCTTGCCCCAGACGTTATCTAAATCTTCTGAATGGGTCCAGAAAGCTGATGCTCCAAACAACAAACGGCGAACTACCGATACAAAAGTTGTAGACGAAACGGCTGAAGAGGCCACCTCAGTTTCATGCTCATTACCACCAGGTGGTTCAGAAACTCTACAAGATCAATCTGGTTGA 1413 44.44 MLFLTNPLLFSVGASFDGLENEGSLFLVQCRSSCCSSHFDLVISVFPFLESDISEALWRLEIGDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGLCKFGVSCKFNHPQPSPVGNMLPQARPGALGSTGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPVLPNLGYNSVNLDESYSNGQLALSTSTPALPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMPSHETLPQTLSKSSEWVQKADAPNNKRRTTDTKVVDETAEEATSVSCSLPPGGSETLQDQSG 470
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 42569552 42573707 + Maker00000969 Lcy8g1596 640488
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1596 470 SMART c3hfinal6 122 149 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 SMART c3hfinal6 169 194 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 SMART c3hfinal6 80 107 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 SMART c3hfinal6 310 337 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 SMART c3hfinal6 353 380 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 MobiDBLite consensus disorder prediction 417 470 - -
Lcy8g1596 470 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872(InterPro)
Lcy8g1596 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 194 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 106 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 379 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 149 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 SUPERFAMILY CCCH zinc finger 356 381 IPR036855 GO:0046872(InterPro)
Lcy8g1596 470 SUPERFAMILY CCCH zinc finger 314 338 IPR036855 GO:0046872(InterPro)
Lcy8g1596 470 MobiDBLite consensus disorder prediction 447 470 - -
Lcy8g1596 470 MobiDBLite consensus disorder prediction 429 446 - -
Lcy8g1596 470 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 PANTHER PROTEIN PHOSPHATASE RELATED 69 381 IPR050974 GO:0003729(PANTHER)
Lcy8g1596 470 SUPERFAMILY CCCH zinc finger 166 195 IPR036855 GO:0046872(InterPro)
Lcy8g1596 470 ProSiteProfiles Zinc finger C3H1-type profile. 353 381 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Gene3D - 152 204 - -
Lcy8g1596 470 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872(InterPro)
Lcy8g1596 470 Gene3D - 77 151 - -
Lcy8g1596 470 Gene3D - 308 386 - -
Lcy8g1596 470 SUPERFAMILY CCCH zinc finger 85 107 IPR036855 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2161 Lcy-Chr5:44575018 Lcy8g1596 Lcy-Chr8:42569552 5.06E-07 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20545 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1596 - - - 0.0