Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1597 ATGCGGCGAGGCAGGCCCTCAGATCCATTCACAGCGACAGAAGTACCGAAATCCACCGTTCAGCCAGAAAATCCTCTCAAAGAGATCCGATACAGAGGTGTTCGGAAGCGTCCGTGGGGTAGATACGCCGCTGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTCGATTCCGCCGAAGAAGCCGCGCGTGCTTACGATCATGCCGCTCGGTCTCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAGCAAATTCCGTTTTACCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTTCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACCGTCGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGCTGTCGATGGTTCGCCGGAGGCCGGTGCAGCCTGTTTCGCCGGACGACTGCCACAGCGACTGTGATTCGTCCTCCTCTGTTGTTGATGATGATGAGGTCTGTGTACTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACCGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 657 53.27 MRRGRPSDPFTATEVPKSTVQPENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDHAARSLRGAKAKTNFPLHPSTISIQQQIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42591582 42592238 + Maker00000680 Lcy8g1597 640489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1597 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677(InterPro)
Lcy8g1597 218 CDD AP2 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 SMART rav1_2 30 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1597 218 MobiDBLite consensus disorder prediction 1 27 - -
Lcy8g1597 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 181 - -
Lcy8g1597 218 FunFam Ethylene-responsive transcription factor 2 30 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1747 Lcy-Chr13:36408360 Lcy8g1597 Lcy-Chr8:42591582 1.93E-26 dispersed
Lcy2g0466 Lcy-Chr2:3981758 Lcy8g1597 Lcy-Chr8:42591582 5.97E-20 dispersed
Lcy4g0676 Lcy-Chr4:8192776 Lcy8g1597 Lcy-Chr8:42591582 2.01E-32 dispersed
Lcy5g1862 Lcy-Chr5:41473988 Lcy8g1597 Lcy-Chr8:42591582 1.34E-34 dispersed
Lcy6g1578 Lcy-Chr6:26854069 Lcy8g1597 Lcy-Chr8:42591582 1.36E-63 dispersed
Lcy7g0125 Lcy-Chr7:1154752 Lcy8g1597 Lcy-Chr8:42591582 1.20E-24 dispersed
Lcy8g0282 Lcy-Chr8:8538838 Lcy8g1597 Lcy-Chr8:42591582 5.07E-22 dispersed
Lcy8g1597 Lcy-Chr8:42591582 Lcy9g1319 Lcy-Chr9:37952784 1.91E-32 dispersed
Lcy1g0297 Lcy-Chr1:2659781 Lcy8g1597 Lcy-Chr8:42591582 4.27E-19 wgd
Lcy4g0733 Lcy-Chr4:8871295 Lcy8g1597 Lcy-Chr8:42591582 4.99E-93 wgd
Lcy5g1860 Lcy-Chr5:41458720 Lcy8g1597 Lcy-Chr8:42591582 9.85E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20546 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1597 K09286 - csv:101221703 393.66