Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1614 ATGAGCAAATCACAAGGGACTTCATCACTCAAAAGAAAAAGGCCAGATTCAGCTCATGGCTCCGGAGGAGCTCTCATAGAGCATGAAAAAGTGCTTTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATGAAAAGAGAAACAAAGTATACTGACAATGTGGTAACTAAATCACTCAAGTCTCTTCAAGCTAGAGGCCTAATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATACTACCTGTCAAAAGATTTCAAACCGTCGAAAGAACTGACCGGCGGTAACTGGTACAGCGACGGAAAGCTCGACAGAGAATACATCAATACTCTTAAAGGTTTTTGTGCTAGAATGATACAGAAGATGAAAGTGGCTACAATGGAAGGGATTGTGGACTCTTTCAAAAGGAGTGGAGCATCAAAAGTGGATTTGTCTAGGGAGCAAATAGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTCATGGAGGTGAAGAGCACTGGCTCAGGGGAATTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGTGTCAAAAGGGAGCCTAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAGTCATTGTACACCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACAACAAATGCCTCAAGGGGAGTATCTTCATCTGCTCTCACTCCGTCGCCGCTCAGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCACGGGAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGGATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGAATCATTGAAAAATTACAAGGGAGAGAGACAAGGAAACGAGTATCTTATCAATCTTATTGATTCACCTGGACACGTTGACTTCTCATCTGAGGTTACAGCTGCTCTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTTCTTGAACTTCAAGTGGATGGAGAAGAGGCTTACCAAACATTCCAGAGGGTCATAGAGAATGCTAATGTGATTATGGCCACGTATGAGGATCCACTTCTTGGAGATGTGCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGTGTAGATGAGTCTAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACGGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGATAAACTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCCGAAGAGAAGGATCTGATGAGCAAAGCACTGATGAAGCGAGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCACAGAAGTACCGTGTTGAGAATTTGTACGAGGGTCCAATGGATGATGCTTACGCTAGTGCCATTAGAAGTTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTTTCCACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTACGTTCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAACAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACTGTTGCCATGGTTGGGCTGGATCAATTTATCACCAAGAATGCCACTCTGACAAATGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTGTCCCCCGTGGTGCGTGTGGCTGTTCAATGTAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTTAAACGTCTGGCGAAGTCAGACCCTATGGTTGTGTGTACCATAGAGGAATCTGGTGAGCACATCGTTGCTGGTGCTGGAGAACTTCACCTGGAGATCTGTCTGAAGGATTTGCAAGACGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAAAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAGCACAATCGTCTGTACATGGAAGCACGACCCTTGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCAAGAGATGATCCCAAAGTCAGGTCTAAAATTTTAGCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCCGAGACTACTGGCCCGAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGACTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGCTTTGAAGTATGTGATGTGGTCCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCAACTGCTAGAAGGGTAATCTATGCTTCTCAGCTGACCGCCAAACCAAGGCTTCTTGAGCCAGTGTACCTTGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGCCATGTCTTCGAGGAGATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCATATCTCCCTGTCATCGAGTCGTTCGGGTTCTCAAGCACATTGAGAGCTGCAACTTCTGGCCAGGCATTCCCACAGTGTGTCTTTGACCATTGGGACCCGATGTCGTCCGATCCATTAGAATCTGGTTCCCAGGCTGCGCAGCTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAA 3282 46.34 MSKSQGTSSLKRKRPDSAHGSGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYTDNVVTKSLKSLQARGLIKLVEHYQNKGKKYYLSKDFKPSKELTGGNWYSDGKLDREYINTLKGFCARMIQKMKVATMEGIVDSFKRSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGVKREPKTGAMASTPCGVCPRISHCTPNGIISPRTCVYYNKCLKGSIFICSHSVAAQVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPMDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDPMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42708728 42714158 + Maker00000494 Lcy8g1614 640506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1614 1093 SMART EFG_IV_2 856 972 IPR005517 GO:0005525(InterPro)
Lcy8g1614 1093 FunFam Translation elongation factor 2 736 813 - -
Lcy8g1614 1093 CDD eEF2_snRNP_like_C 977 1055 - -
Lcy8g1614 1093 CDD aeEF2_snRNP_like_IV 809 981 - -
Lcy8g1614 1093 FunFam Translation elongation factor 2 253 487 - -
Lcy8g1614 1093 CDD EF2_snRNP_III 737 809 - -
Lcy8g1614 1093 CDD EF2 270 480 - -
Lcy8g1614 1093 Pfam Elongation factor G, domain IV 860 972 IPR005517 GO:0005525(InterPro)
Lcy8g1614 1093 Gene3D Elongation Factor G (Translational Gtpase), domain 3 736 813 - -
Lcy8g1614 1093 Gene3D - 820 972 IPR014721 -
Lcy8g1614 1093 SUPERFAMILY EF-G C-terminal domain-like 734 810 IPR035647 -
Lcy8g1614 1093 Pfam Elongation Factor G, domain III 737 799 IPR041095 -
Lcy8g1614 1093 SUPERFAMILY Winged helix DNA-binding domain 27 89 IPR036390 -
Lcy8g1614 1093 Pfam Elongation factor G C-terminus 974 1061 IPR000640 -
Lcy8g1614 1093 CDD EF2_II 625 720 - -
Lcy8g1614 1093 Pfam RNA polymerase Rpc34 subunit 27 127 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Lcy8g1614 1093 Pfam RNA polymerase Rpc34 subunit 128 235 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Lcy8g1614 1093 PRINTS GTP-binding elongation factor signature 315 323 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 PRINTS GTP-binding elongation factor signature 367 378 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 PRINTS GTP-binding elongation factor signature 271 284 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 PRINTS GTP-binding elongation factor signature 351 361 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 PRINTS GTP-binding elongation factor signature 403 412 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 308 323 IPR031157 -
Lcy8g1614 1093 FunFam Translation elongation factor 2 819 972 - -
Lcy8g1614 1093 Pfam Elongation factor Tu GTP binding domain 268 471 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 FunFam Translation elongation factor 2 593 734 - -
Lcy8g1614 1093 Gene3D - 973 1093 - -
Lcy8g1614 1093 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 253 1092 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lcy8g1614 1093 SMART EFG_C_a 974 1063 IPR000640 -
Lcy8g1614 1093 SUPERFAMILY Ribosomal protein S5 domain 2-like 812 976 IPR020568 -
Lcy8g1614 1093 NCBIfam small GTP-binding protein domain 270 426 IPR005225 GO:0005525(InterPro)
Lcy8g1614 1093 SUPERFAMILY Translation proteins 592 726 IPR009000 -
Lcy8g1614 1093 Pfam Elongation factor Tu domain 2 644 712 IPR004161 GO:0005525(InterPro)
Lcy8g1614 1093 Gene3D - 253 487 IPR027417 -
Lcy8g1614 1093 FunFam Translation elongation factor 2 973 1093 - -
Lcy8g1614 1093 Gene3D - 27 90 IPR036388 -
Lcy8g1614 1093 SUPERFAMILY EF-G C-terminal domain-like 977 1088 IPR035647 -
Lcy8g1614 1093 MobiDBLite consensus disorder prediction 1 22 - -
Lcy8g1614 1093 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 267 594 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1614 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 591 IPR027417 -
Lcy8g1614 1093 Gene3D Translation factors 593 734 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1761 Lcy-Chr11:41407379 Lcy8g1614 Lcy-Chr8:42708728 7.90E-119 dispersed
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1614 Lcy-Chr8:42708728 1.80E-89 dispersed
Lcy4g0930 Lcy-Chr4:14885502 Lcy8g1614 Lcy-Chr8:42708728 5.72E-29 dispersed
Lcy4g2038 Lcy-Chr4:46930019 Lcy8g1614 Lcy-Chr8:42708728 1.68E-193 dispersed
Lcy5g0767 Lcy-Chr5:11261238 Lcy8g1614 Lcy-Chr8:42708728 8.49E-22 dispersed
Lcy8g1614 Lcy-Chr8:42708728 Lcy8g1632 Lcy-Chr8:42900616 0 dispersed
Lcy8g1614 Lcy-Chr8:42708728 Lcy8g1615 Lcy-Chr8:42719413 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1614 K03234 - csv:101208886 1648.64