Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1615 ATGGATGCTAACGCACGAGGTCGTTTCACACTCGGCAAACAGTCCTCGCTCAAGCCGGAACGGGAAGGTTCGGCGGTGATTAACGACGAGCTCGATGATCTGATCATGATTGATCCTGGGATTAAGCTGATGTACCTGGCGAATGATGGCGACTCGGATGGGATTAGAGAGCTACTGGATTCGGGTACCGACGTGAATTTTCAGGATACTGACGGACGAACCTCTTTGCATGTTGCTGCCTGTCAGGGCAGGCTGGACGTTGTTGAGTTGCTACTCGAAAGGGGAGCGCAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATAACGACGTGATCAAACTCTTAGAGAGACATGGTGCAAAGCTACCGGTAAGAAACTTTGCCGGGAACATTCCTTGTATATCCCAGATGGCTCCAATGCATGTGCAAAATGCTCGTGAAGTTCCGGAGTATGAGATCAATCCAAATGAGCTTGATTTTTCTGATAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCGTTGTGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTTAGGGATGAACTTTCTTTACTTCAGAAGATCCGCCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACGGAGTATTTGCCCGAGTGGAGCAGTGGCCTTGATATGTTAAAATCTTTCAATCATGAAGAAGTTGATGTCAACTTTGAAATTAGTCTCAAGGGGGACCTTCATGCATTCTTGAACCGTAAAGGTTCCTTGAAGCTAGCAACCGTTGTTGCCAAGAGCACACATCGATCCTCGCATTTAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTGAGCAAACTTCTAAATAAGGTCAAAGAAGACAGACCTGTGGCTGTGACAAGTCATGATTCTTCATATTCCAAGCGAATAGCCCTTCTGTTAACCAATCATCAACTCTTTTGGGGACTGATTATCACACGAACAGTCCTCCCAAAATCTGATGTATTTCCCATTCTTGACTGTGAATTTTGTAAGCTGGTCAAAGATTGGATAATTGTTGGGCAATATGTGGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAGAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTACATAGCTGGTGAACGCCCACCATTTACGGCTCCACCTAAGCGTTATGCACATGGAGTAAAGGAGCTAATCGAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACATTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACAACCGACTTGCGCATGCAAGGAGCTTGAAGCTTGCAAAAACAAGACTATGGAAGCATTGCCCAATCGTAAACCCTAGGTGGCGCAAAAGGGAATTTCTCATTGATACCGCATATTCGGCGTCGCTACGTTTCCCACCACCTCTTATTCCTTCTCTCTCGCACGCTGTTTCGCTGCCTGTACTACTCTTTCGTGGAGGCTCAAGGAACACTCTCTTCCTTTGGCTCTCTCTTCGTCGTCTCTCTGATTCTTCTTTCTTATTTGTCAAGATGGTGAAGTTTACAGCCGACGAGCTTCGTCGGATTATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCTACACTTACAGATTCTCTCGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGGATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGAATCATTGAAAAATTACAAGGGAGAGAGACAAGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGACACGTTGACTTCTCATCTGAGGTTACAGCTGCTCTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTTCAAGTGGATGGAGAAGAGGCTTACCAAACATTCCAGAGGGTCATAGAGAATGCTAATGTGATTATGGCTACTTATGAGGATCCACTTCTTGGAGATGTGCAAGTGTACCCTGAGAAAGGAACAGTCGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCTAAGATGATGGAGAGACTTTGGGGTGAAAACTTCTTTGATCCTGCAACCAAGAAATGGACTGGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTTTGCTACGAACCTATCAAGCAGATCATTGCTACTTGCATGAACGATCAGAAGGATAAACTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTAATGAGTAAAGCATTGATGAAGCGAGTCATGCAAACCTGGCTCCCGGCAAGCAATGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACTGCACAGAAGTACCGTGTTGAGAATTTGTACGAGGGTCCAATGGATGATGCTTACGCTAGTGCCATTAGAAGTTGTGATCCTGAGGGACCTCTTATGCTCTATGTATCGAAGATGATTCCTGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTATCGACTGGCTTGAAAGTGAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTGCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCATGTGGTAATACTGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAACGCCACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTCTCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGACTTAAACGTCTGGCGAAGTCAGACCCTATGGTCGTGTGTACCATAGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTTCACCTGGAGATCTGTCTGAAGGATTTGCAAGATGACTTTATGGGTGGAGCTGAGATCATCAAATCTGACCCTGTCGTCTCTTTCCGAGAAACTGTCCTTGAGAGGTCATGCCGCACTGTGATGAGTAAATCCCCAAACAAACACAATCGTCTGTACATGGAAGCACGACCCTTGGAGGAAAAACTGCCAGAGGCTATTGACGATGGTCGCATTGGACCACGAGACGATCCTAAAGTTCGTTCTAAGATTCTGTCGGAGGAGTTCGGTTGGGACAAAGATCTTGCCAAGAAGATTTGGTGTTTTGGGCCAGAGACTACTGGACCTAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCATCGAAAGAAGGTGCTCTGGCCGAAGAAAACATGAGAGGCATCTGTTTCGAAGTGTGTGATGTAGTTCTTCATGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCCACCGCCAGGAGGGTAATTTATGCTTCTCAGTTGACAGCCAAGCCCAGACTTCTTGAGCCAGTGTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGCCATGTCTTCGAGGAGATGCAGAGGCCCGGTACTCCTCTTTACAACATCAAGGCATATCTCCCTGTCATTGAGTCGTTTGGGTTCTCAAGCACATTGAGAGCTGCAACTTCTGGCCAGGCATTCCCACAGTGTGTCTTTGACCATTGGGACACTATGTCGTCCGATCCATTAGAATCTGGTTCCCAGGCTGCGCAACTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAA 4314 46.04 MDANARGRFTLGKQSSLKPEREGSAVINDELDDLIMIDPGIKLMYLANDGDSDGIRELLDSGTDVNFQDTDGRTSLHVAACQGRLDVVELLLERGAQVDVQDRWGSTPLADAIYYKNNDVIKLLERHGAKLPVRNFAGNIPCISQMAPMHVQNAREVPEYEINPNELDFSDSVNITKGTFRSALWRGIQVAVKTLGEEVFTDEDKVKAFRDELSLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPEWSSGLDMLKSFNHEEVDVNFEISLKGDLHAFLNRKGSLKLATVVAKSTHRSSHLRGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLNKVKEDRPVAVTSHDSSYSKRIALLLTNHQLFWGLIITRTVLPKSDVFPILDCEFCKLVKDWIIVGQYVAPEVYKNEEYDTRVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFTAPPKRYAHGVKELIEECWDEKPHKRPTFRQIIRRLEDINNRLAHARSLKLAKTRLWKHCPIVNPRWRKREFLIDTAYSASLRFPPPLIPSLSHAVSLPVLLFRGGSRNTLFLWLSLRRLSDSSFLFVKMVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTGKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPMDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEKLPEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDTMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1437
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 42719413 42735375 + Maker00001343 Lcy8g1615 640507
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1615 1437 Gene3D Transferase(Phosphotransferase) domain 1 272 524 - -
Lcy8g1615 1437 Gene3D Phosphorylase Kinase; domain 1 161 244 - -
Lcy8g1615 1437 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Lcy8g1615 1437 SMART EFG_C_a 1318 1407 IPR000640 -
Lcy8g1615 1437 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 Pfam Elongation factor Tu domain 2 988 1056 IPR004161 GO:0005525(InterPro)
Lcy8g1615 1437 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1080 1157 - -
Lcy8g1615 1437 Pfam Elongation factor G, domain IV 1204 1316 IPR005517 GO:0005525(InterPro)
Lcy8g1615 1437 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 652 667 IPR031157 -
Lcy8g1615 1437 SUPERFAMILY Protein kinase-like (PK-like) 186 516 IPR011009 -
Lcy8g1615 1437 FunFam Translation elongation factor 2 1080 1157 - -
Lcy8g1615 1437 CDD aeEF2_snRNP_like_IV 1153 1325 - -
Lcy8g1615 1437 CDD EF2_snRNP_III 1081 1153 - -
Lcy8g1615 1437 SUPERFAMILY EF-G C-terminal domain-like 1078 1154 IPR035647 -
Lcy8g1615 1437 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 597 1436 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lcy8g1615 1437 SUPERFAMILY EF-G C-terminal domain-like 1321 1432 IPR035647 -
Lcy8g1615 1437 FunFam Translation elongation factor 2 597 831 - -
Lcy8g1615 1437 Pfam Elongation factor Tu GTP binding domain 612 815 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 CDD EF2_II 969 1064 - -
Lcy8g1615 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 935 IPR027417 -
Lcy8g1615 1437 FunFam Integrin-linked protein kinase family 23 160 - -
Lcy8g1615 1437 Gene3D - 1317 1437 - -
Lcy8g1615 1437 NCBIfam small GTP-binding protein domain 614 769 IPR005225 GO:0005525(InterPro)
Lcy8g1615 1437 ProSiteProfiles Protein kinase domain profile. 169 508 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1615 1437 SUPERFAMILY Ribosomal protein S5 domain 2-like 1156 1320 IPR020568 -
Lcy8g1615 1437 Gene3D - 13 149 IPR036770 -
Lcy8g1615 1437 Pfam Protein kinase domain 186 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1615 1437 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 611 938 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 Pfam Elongation Factor G, domain III 1081 1143 IPR041095 -
Lcy8g1615 1437 CDD EF2 614 824 - -
Lcy8g1615 1437 FunFam Translation elongation factor 2 937 1078 - -
Lcy8g1615 1437 Pfam Ankyrin repeats (3 copies) 43 133 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 FunFam Translation elongation factor 2 1163 1316 - -
Lcy8g1615 1437 Pfam Protein tyrosine and serine/threonine kinase 410 501 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1615 1437 CDD eEF2_snRNP_like_C 1321 1399 - -
Lcy8g1615 1437 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Lcy8g1615 1437 MobiDBLite consensus disorder prediction 1 23 - -
Lcy8g1615 1437 Gene3D - 597 831 IPR027417 -
Lcy8g1615 1437 SUPERFAMILY Translation proteins 936 1070 IPR009000 -
Lcy8g1615 1437 Gene3D Translation factors 937 1078 - -
Lcy8g1615 1437 FunFam serine/threonine-protein kinase STY46-like 162 245 - -
Lcy8g1615 1437 PRINTS GTP-binding elongation factor signature 747 756 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 PRINTS GTP-binding elongation factor signature 615 628 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 PRINTS GTP-binding elongation factor signature 695 705 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 PRINTS GTP-binding elongation factor signature 659 667 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 PRINTS GTP-binding elongation factor signature 711 722 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1615 1437 Gene3D - 1164 1316 IPR014721 -
Lcy8g1615 1437 Pfam Elongation factor G C-terminus 1318 1405 IPR000640 -
Lcy8g1615 1437 SUPERFAMILY Ankyrin repeat 42 142 IPR036770 -
Lcy8g1615 1437 FunFam Translation elongation factor 2 1317 1437 - -
Lcy8g1615 1437 SMART EFG_IV_2 1200 1316 IPR005517 GO:0005525(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0308 Lcy-Chr7:2631918 Lcy8g1615 Lcy-Chr8:42719413 2.96E-59 dispersed
Lcy8g1615 Lcy-Chr8:42719413 Lcy8g1632 Lcy-Chr8:42900616 0 dispersed
Lcy8g1614 Lcy-Chr8:42708728 Lcy8g1615 Lcy-Chr8:42719413 0 tandem
Lcy12g1792 Lcy-Chr12:38962230 Lcy8g1615 Lcy-Chr8:42719413 6.06E-28 transposed
Lcy13g0880 Lcy-Chr13:15248897 Lcy8g1615 Lcy-Chr8:42719413 1.44E-185 transposed
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1615 Lcy-Chr8:42719413 3.64E-88 transposed
Lcy4g2038 Lcy-Chr4:46930019 Lcy8g1615 Lcy-Chr8:42719413 2.40E-188 transposed
Lcy4g0930 Lcy-Chr4:14885502 Lcy8g1615 Lcy-Chr8:42719413 1.20E-28 transposed
Lcy1g0240 Lcy-Chr1:2179730 Lcy8g1615 Lcy-Chr8:42719413 1.14E-131 wgd
Lcy5g1875 Lcy-Chr5:41596723 Lcy8g1615 Lcy-Chr8:42719413 8.48E-16 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66128 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1615 K03234 - csv:101208886 1642.86