Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1615 | ATGGATGCTAACGCACGAGGTCGTTTCACACTCGGCAAACAGTCCTCGCTCAAGCCGGAACGGGAAGGTTCGGCGGTGATTAACGACGAGCTCGATGATCTGATCATGATTGATCCTGGGATTAAGCTGATGTACCTGGCGAATGATGGCGACTCGGATGGGATTAGAGAGCTACTGGATTCGGGTACCGACGTGAATTTTCAGGATACTGACGGACGAACCTCTTTGCATGTTGCTGCCTGTCAGGGCAGGCTGGACGTTGTTGAGTTGCTACTCGAAAGGGGAGCGCAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATAACGACGTGATCAAACTCTTAGAGAGACATGGTGCAAAGCTACCGGTAAGAAACTTTGCCGGGAACATTCCTTGTATATCCCAGATGGCTCCAATGCATGTGCAAAATGCTCGTGAAGTTCCGGAGTATGAGATCAATCCAAATGAGCTTGATTTTTCTGATAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCGTTGTGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTTAGGGATGAACTTTCTTTACTTCAGAAGATCCGCCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACGGAGTATTTGCCCGAGTGGAGCAGTGGCCTTGATATGTTAAAATCTTTCAATCATGAAGAAGTTGATGTCAACTTTGAAATTAGTCTCAAGGGGGACCTTCATGCATTCTTGAACCGTAAAGGTTCCTTGAAGCTAGCAACCGTTGTTGCCAAGAGCACACATCGATCCTCGCATTTAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTGAGCAAACTTCTAAATAAGGTCAAAGAAGACAGACCTGTGGCTGTGACAAGTCATGATTCTTCATATTCCAAGCGAATAGCCCTTCTGTTAACCAATCATCAACTCTTTTGGGGACTGATTATCACACGAACAGTCCTCCCAAAATCTGATGTATTTCCCATTCTTGACTGTGAATTTTGTAAGCTGGTCAAAGATTGGATAATTGTTGGGCAATATGTGGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAGAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTACATAGCTGGTGAACGCCCACCATTTACGGCTCCACCTAAGCGTTATGCACATGGAGTAAAGGAGCTAATCGAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACATTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACAACCGACTTGCGCATGCAAGGAGCTTGAAGCTTGCAAAAACAAGACTATGGAAGCATTGCCCAATCGTAAACCCTAGGTGGCGCAAAAGGGAATTTCTCATTGATACCGCATATTCGGCGTCGCTACGTTTCCCACCACCTCTTATTCCTTCTCTCTCGCACGCTGTTTCGCTGCCTGTACTACTCTTTCGTGGAGGCTCAAGGAACACTCTCTTCCTTTGGCTCTCTCTTCGTCGTCTCTCTGATTCTTCTTTCTTATTTGTCAAGATGGTGAAGTTTACAGCCGACGAGCTTCGTCGGATTATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCTACACTTACAGATTCTCTCGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGGATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGAATCATTGAAAAATTACAAGGGAGAGAGACAAGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGACACGTTGACTTCTCATCTGAGGTTACAGCTGCTCTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTTCAAGTGGATGGAGAAGAGGCTTACCAAACATTCCAGAGGGTCATAGAGAATGCTAATGTGATTATGGCTACTTATGAGGATCCACTTCTTGGAGATGTGCAAGTGTACCCTGAGAAAGGAACAGTCGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCTAAGATGATGGAGAGACTTTGGGGTGAAAACTTCTTTGATCCTGCAACCAAGAAATGGACTGGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTTTGCTACGAACCTATCAAGCAGATCATTGCTACTTGCATGAACGATCAGAAGGATAAACTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTAATGAGTAAAGCATTGATGAAGCGAGTCATGCAAACCTGGCTCCCGGCAAGCAATGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACTGCACAGAAGTACCGTGTTGAGAATTTGTACGAGGGTCCAATGGATGATGCTTACGCTAGTGCCATTAGAAGTTGTGATCCTGAGGGACCTCTTATGCTCTATGTATCGAAGATGATTCCTGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTATCGACTGGCTTGAAAGTGAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTGCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCATGTGGTAATACTGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAACGCCACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTCTCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGACTTAAACGTCTGGCGAAGTCAGACCCTATGGTCGTGTGTACCATAGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTTCACCTGGAGATCTGTCTGAAGGATTTGCAAGATGACTTTATGGGTGGAGCTGAGATCATCAAATCTGACCCTGTCGTCTCTTTCCGAGAAACTGTCCTTGAGAGGTCATGCCGCACTGTGATGAGTAAATCCCCAAACAAACACAATCGTCTGTACATGGAAGCACGACCCTTGGAGGAAAAACTGCCAGAGGCTATTGACGATGGTCGCATTGGACCACGAGACGATCCTAAAGTTCGTTCTAAGATTCTGTCGGAGGAGTTCGGTTGGGACAAAGATCTTGCCAAGAAGATTTGGTGTTTTGGGCCAGAGACTACTGGACCTAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCATCGAAAGAAGGTGCTCTGGCCGAAGAAAACATGAGAGGCATCTGTTTCGAAGTGTGTGATGTAGTTCTTCATGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCCACCGCCAGGAGGGTAATTTATGCTTCTCAGTTGACAGCCAAGCCCAGACTTCTTGAGCCAGTGTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGCCATGTCTTCGAGGAGATGCAGAGGCCCGGTACTCCTCTTTACAACATCAAGGCATATCTCCCTGTCATTGAGTCGTTTGGGTTCTCAAGCACATTGAGAGCTGCAACTTCTGGCCAGGCATTCCCACAGTGTGTCTTTGACCATTGGGACACTATGTCGTCCGATCCATTAGAATCTGGTTCCCAGGCTGCGCAACTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAA | 4314 | 46.04 | MDANARGRFTLGKQSSLKPEREGSAVINDELDDLIMIDPGIKLMYLANDGDSDGIRELLDSGTDVNFQDTDGRTSLHVAACQGRLDVVELLLERGAQVDVQDRWGSTPLADAIYYKNNDVIKLLERHGAKLPVRNFAGNIPCISQMAPMHVQNAREVPEYEINPNELDFSDSVNITKGTFRSALWRGIQVAVKTLGEEVFTDEDKVKAFRDELSLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPEWSSGLDMLKSFNHEEVDVNFEISLKGDLHAFLNRKGSLKLATVVAKSTHRSSHLRGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLNKVKEDRPVAVTSHDSSYSKRIALLLTNHQLFWGLIITRTVLPKSDVFPILDCEFCKLVKDWIIVGQYVAPEVYKNEEYDTRVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFTAPPKRYAHGVKELIEECWDEKPHKRPTFRQIIRRLEDINNRLAHARSLKLAKTRLWKHCPIVNPRWRKREFLIDTAYSASLRFPPPLIPSLSHAVSLPVLLFRGGSRNTLFLWLSLRRLSDSSFLFVKMVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTGKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPMDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEKLPEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDTMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL | 1437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42719413 | 42735375 | + | Maker00001343 | Lcy8g1615 | 640507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1615 | 1437 | Gene3D | Transferase(Phosphotransferase) domain 1 | 272 | 524 | - | - | |
Lcy8g1615 | 1437 | Gene3D | Phosphorylase Kinase; domain 1 | 161 | 244 | - | - | |
Lcy8g1615 | 1437 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - | |
Lcy8g1615 | 1437 | SMART | EFG_C_a | 1318 | 1407 | IPR000640 | - | |
Lcy8g1615 | 1437 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | SMART | ANK_2a | 39 | 67 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | Pfam | Elongation factor Tu domain 2 | 988 | 1056 | IPR004161 | GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 1080 | 1157 | - | - | |
Lcy8g1615 | 1437 | Pfam | Elongation factor G, domain IV | 1204 | 1316 | IPR005517 | GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 652 | 667 | IPR031157 | - | |
Lcy8g1615 | 1437 | SUPERFAMILY | Protein kinase-like (PK-like) | 186 | 516 | IPR011009 | - | |
Lcy8g1615 | 1437 | FunFam | Translation elongation factor 2 | 1080 | 1157 | - | - | |
Lcy8g1615 | 1437 | CDD | aeEF2_snRNP_like_IV | 1153 | 1325 | - | - | |
Lcy8g1615 | 1437 | CDD | EF2_snRNP_III | 1081 | 1153 | - | - | |
Lcy8g1615 | 1437 | SUPERFAMILY | EF-G C-terminal domain-like | 1078 | 1154 | IPR035647 | - | |
Lcy8g1615 | 1437 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 597 | 1436 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
Lcy8g1615 | 1437 | SUPERFAMILY | EF-G C-terminal domain-like | 1321 | 1432 | IPR035647 | - | |
Lcy8g1615 | 1437 | FunFam | Translation elongation factor 2 | 597 | 831 | - | - | |
Lcy8g1615 | 1437 | Pfam | Elongation factor Tu GTP binding domain | 612 | 815 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | CDD | EF2_II | 969 | 1064 | - | - | |
Lcy8g1615 | 1437 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 598 | 935 | IPR027417 | - | |
Lcy8g1615 | 1437 | FunFam | Integrin-linked protein kinase family | 23 | 160 | - | - | |
Lcy8g1615 | 1437 | Gene3D | - | 1317 | 1437 | - | - | |
Lcy8g1615 | 1437 | NCBIfam | small GTP-binding protein domain | 614 | 769 | IPR005225 | GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | ProSiteProfiles | Protein kinase domain profile. | 169 | 508 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1615 | 1437 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 1156 | 1320 | IPR020568 | - | |
Lcy8g1615 | 1437 | Gene3D | - | 13 | 149 | IPR036770 | - | |
Lcy8g1615 | 1437 | Pfam | Protein kinase domain | 186 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1615 | 1437 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 611 | 938 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | Pfam | Elongation Factor G, domain III | 1081 | 1143 | IPR041095 | - | |
Lcy8g1615 | 1437 | CDD | EF2 | 614 | 824 | - | - | |
Lcy8g1615 | 1437 | FunFam | Translation elongation factor 2 | 937 | 1078 | - | - | |
Lcy8g1615 | 1437 | Pfam | Ankyrin repeats (3 copies) | 43 | 133 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | FunFam | Translation elongation factor 2 | 1163 | 1316 | - | - | |
Lcy8g1615 | 1437 | Pfam | Protein tyrosine and serine/threonine kinase | 410 | 501 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy8g1615 | 1437 | CDD | eEF2_snRNP_like_C | 1321 | 1399 | - | - | |
Lcy8g1615 | 1437 | ProSiteProfiles | Ankyrin repeat profile. | 104 | 136 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515(InterPro) | |
Lcy8g1615 | 1437 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lcy8g1615 | 1437 | Gene3D | - | 597 | 831 | IPR027417 | - | |
Lcy8g1615 | 1437 | SUPERFAMILY | Translation proteins | 936 | 1070 | IPR009000 | - | |
Lcy8g1615 | 1437 | Gene3D | Translation factors | 937 | 1078 | - | - | |
Lcy8g1615 | 1437 | FunFam | serine/threonine-protein kinase STY46-like | 162 | 245 | - | - | |
Lcy8g1615 | 1437 | PRINTS | GTP-binding elongation factor signature | 747 | 756 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | PRINTS | GTP-binding elongation factor signature | 615 | 628 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | PRINTS | GTP-binding elongation factor signature | 695 | 705 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | PRINTS | GTP-binding elongation factor signature | 659 | 667 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | PRINTS | GTP-binding elongation factor signature | 711 | 722 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy8g1615 | 1437 | Gene3D | - | 1164 | 1316 | IPR014721 | - | |
Lcy8g1615 | 1437 | Pfam | Elongation factor G C-terminus | 1318 | 1405 | IPR000640 | - | |
Lcy8g1615 | 1437 | SUPERFAMILY | Ankyrin repeat | 42 | 142 | IPR036770 | - | |
Lcy8g1615 | 1437 | FunFam | Translation elongation factor 2 | 1317 | 1437 | - | - | |
Lcy8g1615 | 1437 | SMART | EFG_IV_2 | 1200 | 1316 | IPR005517 | GO:0005525(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0308 | Lcy-Chr7:2631918 | Lcy8g1615 | Lcy-Chr8:42719413 | 2.96E-59 | dispersed | |
Lcy8g1615 | Lcy-Chr8:42719413 | Lcy8g1632 | Lcy-Chr8:42900616 | 0 | dispersed | |
Lcy8g1614 | Lcy-Chr8:42708728 | Lcy8g1615 | Lcy-Chr8:42719413 | 0 | tandem | |
Lcy12g1792 | Lcy-Chr12:38962230 | Lcy8g1615 | Lcy-Chr8:42719413 | 6.06E-28 | transposed | |
Lcy13g0880 | Lcy-Chr13:15248897 | Lcy8g1615 | Lcy-Chr8:42719413 | 1.44E-185 | transposed | |
Lcy2g1091 | Lcy-Chr2:10782727 | Lcy8g1615 | Lcy-Chr8:42719413 | 3.64E-88 | transposed | |
Lcy4g2038 | Lcy-Chr4:46930019 | Lcy8g1615 | Lcy-Chr8:42719413 | 2.40E-188 | transposed | |
Lcy4g0930 | Lcy-Chr4:14885502 | Lcy8g1615 | Lcy-Chr8:42719413 | 1.20E-28 | transposed | |
Lcy1g0240 | Lcy-Chr1:2179730 | Lcy8g1615 | Lcy-Chr8:42719413 | 1.14E-131 | wgd | |
Lcy5g1875 | Lcy-Chr5:41596723 | Lcy8g1615 | Lcy-Chr8:42719413 | 8.48E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66128 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1615 | K03234 | - | csv:101208886 | 1642.86 |