Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1622 ATGCAACAGAATTCAACCGAAGTGGAGTTCTTCTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGTGTGGTGTGTTCTGCAATTGACACTCGCACTGGTGACAAGGTTGCTATAAAGAAGATACATAATATTTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGTGAGATAAAGCTTCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGACTTCAAAGACATCTACGTTGTTTTTGAGCTTATGGAATCAGATCTCCACCAAGTTATTAAAGCGAATGATGATCTGACTCGAGAACACTATCAGTTTTTCCTCTACCAACTACTTCGTGCATTAAAATATATCCATACAGGTGCTAGTCATGCTTTGATTTGTTTTGGTACTCTACTGTCTAATGTCTACCATCGAGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAGATTTGTGATTTTGGATTGGCAAGAGTTGCCTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTATCGAGCTCCAGAGCTATGCGGTTCATTTTTCTCCAAGAACTCATCGTTCGATGTTTATATACAGTATACACCTGCAATTGATATATGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTTGTTCACCAGCTTGATTTGATGACGGATCTCCTTGGAACTCCTTCATTAGATACGATCTCCAGGGTACGTAACGATAAGGCCAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTGCCATTTGCTCAAAAGTTTCCAAATGCAGATCCTTTAGCGCTGAGGCTACTAGAAAGGTTGCTTGCTTTTGATCCAAAAGATAGGCCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCTTGCCAGCCAATTACAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCACAAAAGAAGACATTCAAGAGCTAATCTTCCGTGAGATACTAGAATATCATCCCCAGCTACTAAAGGACTACATGAACGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTCGACCAATTTAGAAAGCAGTTTGCACATCTAGAGGAAAATGGTGGTAAAAGTGCGCCGGTAATTCCTCTTGACAGAAAGCATGTGTCTCTGCCAAGGTCGACAGTTGTACACTCGAACACGGCCTATTCTAAGGACCAACTAAATAATGTACCCCTCCAAGATGGGAAGATCTCTGAAGAGGCATACAACAAGAATTCCCGAGATATTGAAGGACGGCTAACAAATATATCAAGGGCCATGCAGGCACCACAAAAGATCCCATTCGCTAAGCCTGGTAGAGTGGTTGGACCAGTTATAGCAGATGAGAATGGAAGGCTAGTGAAGGAACCGTACGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCATTACCAAAAACCCATTGCAGGAAATCAAGAAAGATCGGCATCAGAAACGAAACTGGATATTTCCTTGAGGGCCACCAAGCAAGCATCCCAGTGCGGCATGGCTTCCAAATTAGGAACAGACATAGCCATCAGCATCGATTCGAACCCCTTTTACATGACACGTGCAGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGATGCAAACTTCCTGCAGGCGAAGGCCACCCAATACGGTGGTCTTGGTGTAGCAACCGCCACCACCACCTCGGTTGCTCACAGAAAGGTGGTTGCCGGTCAGTTTAGCATGACAAAGATGTACTGA 1908 42.66 MQQNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTGASHALICFGTLLSNVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKNSSFDVYIQYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNTAYSKDQLNNVPLQDGKISEEAYNKNSRDIEGRLTNISRAMQAPQKIPFAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYQKPIAGNQERSASETKLDISLRATKQASQCGMASKLGTDIAISIDSNPFYMTRAGVNKVELKDQISIDANFLQAKATQYGGLGVATATTTSVAHRKVVAGQFSMTKMY 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42791873 42796770 - Maker00000372 Lcy8g1622 640514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1622 635 Gene3D Transferase(Phosphotransferase) domain 1 106 356 - -
Lcy8g1622 635 SUPERFAMILY Protein kinase-like (PK-like) 16 337 IPR011009 -
Lcy8g1622 635 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 374 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy8g1622 635 Gene3D Phosphorylase Kinase; domain 1 35 379 - -
Lcy8g1622 635 FunFam Mitogen-activated protein kinase 106 356 - -
Lcy8g1622 635 Pfam Protein kinase domain 20 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1622 635 ProSiteProfiles Protein kinase domain profile. 20 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1622 635 FunFam Mitogen-activated protein kinase 10 113 - -
Lcy8g1622 635 CDD STKc_TDY_MAPK 19 378 - -
Lcy8g1622 635 SMART serkin_6 20 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1622 635 ProSitePatterns Protein kinases ATP-binding region signature. 26 50 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0234 Lcy-Chr13:2461168 Lcy8g1622 Lcy-Chr8:42791873 1.70E-251 dispersed
Lcy6g0666 Lcy-Chr6:6343868 Lcy8g1622 Lcy-Chr8:42791873 5.17E-211 dispersed
Lcy7g1245 Lcy-Chr7:15588274 Lcy8g1622 Lcy-Chr8:42791873 9.85E-220 dispersed
Lcy8g1560 Lcy-Chr8:42232234 Lcy8g1622 Lcy-Chr8:42791873 1.18E-47 dispersed
Lcy8g1622 Lcy-Chr8:42791873 Lcy9g0129 Lcy-Chr9:2818138 6.93E-36 dispersed
Lcy4g0766 Lcy-Chr4:9168547 Lcy8g1622 Lcy-Chr8:42791873 9.86E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66129 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1622 - - - 0.0