Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1625 ATGGCAGCTTCATCAATGGCTCTGTCTTCCCCATCTCTGGCCGGCCAAGCCGTGACACTGTCCCCCGCCGCCTCCGACCTCCTCGGCAAAGGCCGTGTCACCATGAGGAAAACCGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCCCGAGCTCCTCTCTCGCAACGGCGTCAAATTCGGCGAGGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGCAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCTTGCCAAGTTGTGCTGATGGGCGCCGTCGAGGGCTACAGAATTGCCGGTGGGCCTCTCGGCGAAATCACCGACCCGATCTACCCAGGTGGGAGCTTCGACCCATTGGGGCTGGCCGATGACCCAGAGGCCTTCGCTGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCGATGTTTTCCATGTTCGGATTCTTTGTTCAGGCCATTGTTACTGGCAAAGGGCCTTTGGAGAATTTGGCCGACCATTTGGCCGACCCTGTTAACAACAATGCTTGGGCCTATGCCACTAACTTTGCCAGTTGTCGAATTAATGCCATTAACGACCAAGATCATTCCAATGCCCTTATCTTAACGGTGTTAGAAGGCTGCCCCAGTTGGCTTTTTGGCCAAAACCCGACTCGACCCGACTCAAAAGGCTCCGGATTTGGAGTTTTGGGACTTGGGATTGAATGGGATTGGGAACAGCATTTTGGCATATCCCCCATGCTTTTTGGGTCTCCATTGGCTAAGCACGATTCGCTTTATTTCCCTTTCTGGGTTCCTGGAGGAAGGGGCAAATCTGGGTCTATCTTCGATTACTACATGAGGTCCTTGGTCCTTATTTCATACCTGAATTTCCAGATGGTGTTCAGTGGTTCAGATATGGCGTCTGGGAATTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGCTTGTCATTGTGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTATTGTCTATGTGGATTCTGTTTCGAAAAAAATCTAAAAGATCCATGGATAAATTCCCTATTTCCCAAATACCTAATTTTTCAAAAGATATCAGGATAGACCAGGTTGGGGCTCAAACTCCCAATGACCACCCTGAAAATAGGCTTCTTTCGGTTGATGTCAAAAGAAATGATGAAAACTCTGAAGTTATGGCTGTGACAAAATCGAGTGAACCCGATAACAATAGCCAATGCAGTTCCACTTATCATCACGAAAAAGCAGGCAATTCACAATCAGGAGAAGAAGGAAGCTCTGGAAATGCTAGGAAGCAGGCTTCGAGAACTTATGGAGGATACGGAGGAATTGTTCCACCGTCTCCTCTTGTTGGTTTGCCAGAAATTTCACATCTTGGCTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTACTGAAAATATTCTTGGAGAGGGGGGATATGGGGTTGTATATAAAGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGGCATAAGAATCTTGTCCGACTGCTGGGGTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTGCATGGAGCCATGTGCCAACATGGCTCGCTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACCGCTAAGGCGCTTGCGTATTTACATGAAGCAATTGAACCAAAAGTTGTTCACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTCATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCCTGCTAGAAGCAATTACGGGGAGGGACCCTGTGGATTATGCCCGTCCTTCTAATGAGGTTAATCTTGTTGAATGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGGTTAAGCCTACTACTCGCGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGAATGCTCGAAGCCGACGAATTTCCACTGCACGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGTCGATGAAAGAAATATCAGAATCAGTTGTTGCTTACAACTCTGCTTGCTCTGCATTGTCCATTCCCTTGTTTAGAATATCATTCATTACACATCTCTCACTTGTCGTCTTTCTACGATCGGTATTCGCTTGCTTTCTGGTGCAGCAAAAGGATCGATATCTTCATTGGTATGAGATGATGACTTTCGAGGACGAGGAAAACCCGTTGTTGCAAAATGGAGAAGTTGAGGAGTAA 2817 48.17 MAASSMALSSPSLAGQAVTLSPAASDLLGKGRVTMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFASCRINAINDQDHSNALILTVLEGCPSWLFGQNPTRPDSKGSGFGVLGLGIEWDWEQHFGISPMLFGSPLAKHDSLYFPFWVPGGRGKSGSIFDYYMRSLVLISYLNFQMVFSGSDMASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPISQIPNFSKDIRIDQVGAQTPNDHPENRLLSVDVKRNDENSEVMAVTKSSEPDNNSQCSSTYHHEKAGNSQSGEEGSSGNARKQASRTYGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGSLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISESVVAYNSACSALSIPLFRISFITHLSLVVFLRSVFACFLVQQKDRYLHWYEMMTFEDEENPLLQNGEVEE 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42832368 42842873 - Maker00000924 Lcy8g1625 640517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1625 938 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Lcy8g1625 938 ProSitePatterns Protein kinases ATP-binding region signature. 572 595 IPR017441 GO:0005524(InterPro)
Lcy8g1625 938 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Lcy8g1625 938 SUPERFAMILY Chlorophyll a-b binding protein 50 263 - -
Lcy8g1625 938 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Lcy8g1625 938 MobiDBLite consensus disorder prediction 481 528 - -
Lcy8g1625 938 MobiDBLite consensus disorder prediction 481 523 - -
Lcy8g1625 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1625 938 Gene3D Transferase(Phosphotransferase) domain 1 642 855 - -
Lcy8g1625 938 PANTHER OS01G0323000 PROTEIN 385 861 IPR052232 -
Lcy8g1625 938 SUPERFAMILY Protein kinase-like (PK-like) 550 842 IPR011009 -
Lcy8g1625 938 SMART serkin_6 566 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1625 938 Pfam Protein kinase domain 567 835 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1625 938 Coils Coil 586 606 - -
Lcy8g1625 938 ProSiteProfiles Protein kinase domain profile. 566 830 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1625 938 FunFam Putative receptor-like protein kinase 548 641 - -
Lcy8g1625 938 CDD STKc_IRAK 572 838 - -
Lcy8g1625 938 Gene3D Phosphorylase Kinase; domain 1 549 641 - -
Lcy8g1625 938 FunFam Putative receptor-like serine/threonine-protein kinase 642 852 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0901 Lcy-Chr12:13013602 Lcy8g1625 Lcy-Chr8:42832368 3.46E-190 dispersed
Lcy13g0904 Lcy-Chr13:16135842 Lcy8g1625 Lcy-Chr8:42832368 2.13E-16 dispersed
Lcy13g2091 Lcy-Chr13:39893780 Lcy8g1625 Lcy-Chr8:42832368 6.34E-173 dispersed
Lcy1g0980 Lcy-Chr1:8644986 Lcy8g1625 Lcy-Chr8:42832368 4.05E-169 dispersed
Lcy2g1692 Lcy-Chr2:25394891 Lcy8g1625 Lcy-Chr8:42832368 1.32E-55 dispersed
Lcy4g1762 Lcy-Chr4:43650739 Lcy8g1625 Lcy-Chr8:42832368 4.55E-171 dispersed
Lcy5g1745 Lcy-Chr5:40082418 Lcy8g1625 Lcy-Chr8:42832368 1.18E-168 dispersed
Lcy5g1746 Lcy-Chr5:40088434 Lcy8g1625 Lcy-Chr8:42832368 7.26E-171 dispersed
Lcy6g1248 Lcy-Chr6:15037695 Lcy8g1625 Lcy-Chr8:42832368 7.96E-110 dispersed
Lcy7g1187 Lcy-Chr7:13962237 Lcy8g1625 Lcy-Chr8:42832368 3.88E-17 dispersed
Lcy7g1305 Lcy-Chr7:18083029 Lcy8g1625 Lcy-Chr8:42832368 9.20E-94 dispersed
Lcy8g1625 Lcy-Chr8:42832368 Lcy6g1411 Lcy-Chr6:20994050 3.83E-80 dispersed
Lcy9g0400 Lcy-Chr9:11290025 Lcy8g1625 Lcy-Chr8:42832368 8.72E-58 dispersed
Lcy9g2374 Lcy-Chr9:48038279 Lcy8g1625 Lcy-Chr8:42832368 5.83E-38 dispersed
Lcy9g2372 Lcy-Chr9:48026710 Lcy8g1625 Lcy-Chr8:42832368 7.18E-13 transposed
Lcy10g1364 Lcy-Chr10:36832151 Lcy8g1625 Lcy-Chr8:42832368 5.89E-70 transposed
Lcy1g0202 Lcy-Chr1:1850000 Lcy8g1625 Lcy-Chr8:42832368 1.54E-40 wgd
Lcy10g1970 Lcy-Chr10:43780799 Lcy8g1625 Lcy-Chr8:42832368 5.65E-55 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy8g1625 Lcy-Chr8:42832368 3.39E-274 wgd
Lcy5g1879 Lcy-Chr5:41646842 Lcy8g1625 Lcy-Chr8:42832368 9.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66130 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1625 - - - 0.0