Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1632 ATGGACTATAAGCACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCGACACTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGGATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCATTGAAAAGTTACAAGGGAGAGAGACAAGGAAATGAGTATCTTATCAATCTTATTGATTCCCCTGGGCACGTTGACTTCTCATCTGAGGTTACTGCTGCTCTGCGGATCACTGATGGTGCCCTTGTTGTGGTGGATTGTGTTGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTTCAAGTGGATGGAGAAGAGGCTTACCAAACATTCCAGAGGGTCATAGAGAATGCTAATGTGATTATGGCCACATATGAGGATCCACTTCTTGGCGATGTGCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCCGGTTTGCACGGTTGGGCATTTACCTTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCTAAGATGATGGAGAGACTTTGGGGTGAAAACTTCTTTGATCCTGCAACTAAGAAATGGACAGGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTTTGCTACGAACCTATCAAGCAGATTATTGCAACTTGCATGAACGATCAGAAGGATAAACTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTAATGAGTAAAGCATTGATGAAGCGAGTCATGCAAACCTGGCTCCCGGCAAGCAATGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACAGCACAGAAGTACCGTGTTGAGAATTTGTACGAGGGTCCAATGGATGATGCTTACGCTAGTGCCATTAGAAGTTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTTTCGACTGGTTTGAAAGTGAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTGCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCATGTGGTAATACTGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAACGCCACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTCTCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGACTTAAACGTCTGGCGAAGTCAGACCCTATGGTCGTGTGTACCATAGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTTCACCTGGAAATCTGTCTGAAGGATTTGCAAGATGACTTTATGGGTGGAGCTGAGATCATCAAATCTGACCCCGTCGTCTCTTTTCGAGAAACTGTCCTTGAGAGGTCATGCCGCACTGTGATGAGTAAATCCCCGAACAAACACAATCGTCTGTACATGGAAGCACGACCCTTGGAGGAAAAACTGCCAGAGGCTATTGACGATGGTCGCATTGGACCACGAGATGATCCTAAAGTTCGTTCTAAGATTCTGTCAGAGGAGTTCGGTTGGGACAAAGATCTTGCCAAGAAGATTTGGTGTTTTGGGCCAGAGACTACTGGACCTAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCATCGAAAGAAGGTGCTCTGGCCGAAGAAAACATGAGAGGCATCTGTTTCGAAGTGTGTGATGTAGTTCTTCATGCGGATGCCATCCATAGAGGAGGTGGTCAAGTCATTCCCACCGCCAGGAGGGTAATTTACGCTTCTCAGTTGACAGCCAAGCCCAGACTTCTTGAGCCAGTGTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCTTTGGGAGGTATCTACAGCGTTCTTAACCAGAAGCGTGGACATGTGTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAGGCTTATCTACCCGTCATCGAGTCCTTCGGATTCTCAAGCACTTTGAGAGCTGCAACATCTGGCCAGGCTTTCCCTCAGTGTGTGTTTGACCATTGGGACATGATGTCTTCAGATCCATTGGAAGCTGGTTCCCAGGCTGCGCAGTTGGTTTCTGATATCAGGAAGAGGAAGGGATTGAAGGAGCAGATGACTCCATTGTCTGAGTTCGAAGACAAGCTTTAA 2496 46.63 MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTGKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPMDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEKLPEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAQLVSDIRKRKGLKEQMTPLSEFEDKL 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42900616 42904409 - Maker00000538 Lcy8g1632 640524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1632 831 FunFam Translation elongation factor 2 474 551 - -
Lcy8g1632 831 Gene3D - 711 831 - -
Lcy8g1632 831 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 830 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lcy8g1632 831 Pfam Elongation Factor G, domain III 475 537 IPR041095 -
Lcy8g1632 831 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 332 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 SUPERFAMILY Translation proteins 330 464 IPR009000 -
Lcy8g1632 831 SUPERFAMILY EF-G C-terminal domain-like 472 548 IPR035647 -
Lcy8g1632 831 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Lcy8g1632 831 NCBIfam small GTP-binding protein domain 8 164 IPR005225 GO:0005525(InterPro)
Lcy8g1632 831 Pfam Elongation factor G, domain IV 598 710 IPR005517 GO:0005525(InterPro)
Lcy8g1632 831 SUPERFAMILY Ribosomal protein S5 domain 2-like 550 714 IPR020568 -
Lcy8g1632 831 CDD EF2_II 363 458 - -
Lcy8g1632 831 CDD eEF2_snRNP_like_C 715 793 - -
Lcy8g1632 831 Pfam Elongation factor G C-terminus 712 799 IPR000640 -
Lcy8g1632 831 Pfam Elongation factor Tu domain 2 382 450 IPR004161 GO:0005525(InterPro)
Lcy8g1632 831 SMART EFG_C_a 712 801 IPR000640 -
Lcy8g1632 831 CDD EF2 8 218 - -
Lcy8g1632 831 Gene3D Elongation Factor G (Translational Gtpase), domain 3 474 551 - -
Lcy8g1632 831 SMART EFG_IV_2 594 710 IPR005517 GO:0005525(InterPro)
Lcy8g1632 831 CDD EF2_snRNP_III 475 547 - -
Lcy8g1632 831 Gene3D - 558 710 IPR014721 -
Lcy8g1632 831 FunFam Translation elongation factor 2 557 710 - -
Lcy8g1632 831 Pfam Elongation factor Tu GTP binding domain 6 209 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 Gene3D Translation factors 331 472 - -
Lcy8g1632 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 329 IPR027417 -
Lcy8g1632 831 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy8g1632 831 FunFam Translation elongation factor 2 1 225 - -
Lcy8g1632 831 FunFam Translation elongation factor 2 331 472 - -
Lcy8g1632 831 CDD aeEF2_snRNP_like_IV 547 719 - -
Lcy8g1632 831 Gene3D - 1 225 IPR027417 -
Lcy8g1632 831 FunFam Translation elongation factor 2 711 831 - -
Lcy8g1632 831 SUPERFAMILY EF-G C-terminal domain-like 715 826 IPR035647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1614 Lcy-Chr8:42708728 Lcy8g1632 Lcy-Chr8:42900616 0 dispersed
Lcy8g1615 Lcy-Chr8:42719413 Lcy8g1632 Lcy-Chr8:42900616 0 dispersed
Lcy8g1632 Lcy-Chr8:42900616 Lcy1g2830 Lcy-Chr1:56548164 6.30E-06 dispersed
Lcy4g0930 Lcy-Chr4:14885502 Lcy8g1632 Lcy-Chr8:42900616 7.24E-29 transposed
Lcy12g1792 Lcy-Chr12:38962230 Lcy8g1632 Lcy-Chr8:42900616 3.73E-28 transposed
Lcy13g0880 Lcy-Chr13:15248897 Lcy8g1632 Lcy-Chr8:42900616 1.23E-192 transposed
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1632 Lcy-Chr8:42900616 2.44E-91 transposed
Lcy4g2038 Lcy-Chr4:46930019 Lcy8g1632 Lcy-Chr8:42900616 2.53E-195 transposed
Lcy10g1994 Lcy-Chr10:44025565 Lcy8g1632 Lcy-Chr8:42900616 1.45E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1632 K03234 - csv:101209544 1623.22