Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1638 ATGAAGGAGAGTGGAAGAAAACAAGGCACTCTTTCGCCGTGTGCAGCTTGTAAGCTTCTTCGTCGAAGATGTGCTCAAGATTGCGTTTTCGCCCCTTATTTTCCCGCCGACGAGCCTCACAAGTTCGCCAGCGTTCATAAAGTCTTCGGAGCTAGTAATGTCAACAAGATGTTGCAGGAGCTACCAGAGCACCAGCGAAGTGATGCGGTGAGCTCGATGGTATATGAGGCAAACGCGAGAGTGAGGGATCCAGTGTACGGTTGCGTCGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACCCAGCTAGCGATTGCGCAGGCGGAGGTCGTACACATGCGGATGCGCCAGTTCCCGTCGCCCTCCAACCCGACCGCGGGCCACTCGTCGGAAACCGCTTCGCCCTCCGGCAAGATGAACATTCCGGCACAAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 513 54.19 MKESGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSPSNPTAGHSSETASPSGKMNIPAQNKSYFSMDMVDHDNMGESLWSSC 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42979317 42981725 + Maker00000965 Lcy8g1638 640530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1638 170 Coils Coil 92 112 - -
Lcy8g1638 170 MobiDBLite consensus disorder prediction 120 142 - -
Lcy8g1638 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Lcy8g1638 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 136 - -
Lcy8g1638 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Lcy8g1638 170 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2164 Lcy-Chr10:45606970 Lcy8g1638 Lcy-Chr8:42979317 7.28E-51 dispersed
Lcy5g1567 Lcy-Chr5:37143643 Lcy8g1638 Lcy-Chr8:42979317 1.02E-77 dispersed
Lcy7g0794 Lcy-Chr7:7686872 Lcy8g1638 Lcy-Chr8:42979317 1.18E-36 dispersed
Lcy7g0903 Lcy-Chr7:9109038 Lcy8g1638 Lcy-Chr8:42979317 1.69E-30 dispersed
Lcy7g1019 Lcy-Chr7:10781412 Lcy8g1638 Lcy-Chr8:42979317 6.85E-57 dispersed
Lcy7g1059 Lcy-Chr7:11260556 Lcy8g1638 Lcy-Chr8:42979317 3.69E-48 dispersed
Lcy8g0393 Lcy-Chr8:12067168 Lcy8g1638 Lcy-Chr8:42979317 4.96E-41 dispersed
Lcy8g1401 Lcy-Chr8:40681297 Lcy8g1638 Lcy-Chr8:42979317 4.52E-20 dispersed
Lcy8g1638 Lcy-Chr8:42979317 Lcy8g1716 Lcy-Chr8:43689938 2.31E-51 dispersed
Lcy4g0786 Lcy-Chr4:9452814 Lcy8g1638 Lcy-Chr8:42979317 2.21E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20553 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1638 - - - 0.0