Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1656 ATGGCTGTAAGAGCAATCGCAAAGGCTCGTTCAGTGGTGCGAGTGCGATCGACCAGACATCCTCTTCTATCATCACCTTCTGATGTGCTTGCGGTGCAGAAACCTCACTCCCCCACTCTTCTCATTCGTTCGATGAGCTCGGAGGCGCAGAGCAAAGCCGCTCGTCTTCACGGTTCTGGATTGTTGCGAAGCAAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCGAAATCCAGCCAATGGTGAAGTTATAACCGATGTCCCGCTCATGGGCCAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGTTTACGTAAATGGTATGAGCTCCTAATGGCCCACAAAAATGAGATTGCACAACTGATAACCTTAGAGCAAGGCAAACCGTTGAAGGAAGCCGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCCGAGGAGGCCAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCCTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACTCCCTTGACAGCTTTAGCAGCGGCTGAGCTCTCACTTCAAGCTGGAATTCCACCAGGTGTAGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCAGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCACCTTGCATAATCTTTGATGACGCTGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCAAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGCATATACGAGAAATTTGCAAATGCTTTCTCGAAAGCTGTACAAAATCTGCAAGTTGGTGATGGGTTTAGTGAAGGTGTAGTTCAGGGTCCTTTAATTAATGAAGCTGCTGTGCAGAAGGTTGAGAAATTTCTTGAAGATGCCATCACAAAGGCTCTGGTAGCTTATTACTTCACGACTTTTATGTTTTCTGATCTTGCTATTCACCAGATTCTAGCTTTCCTGAATCGAATGTTTCCTGATCTTGCTATTCACCAGATTAATAGAGCCAAATGTTCTCTGTTTGGCATTATCTGTGACAAGGAGAAGGAGGATGATGAGCTCATATACCTATGGATTAAAAGATGGACAAGCAACTTTCTTTTGGAAATCAGCGGATTTTTTAGCATTATAATGGCCACTGACAGCTCGATTAGACTTCCATTTACTGTCTCTCGTTATACCTCAATGGCAAAAGAGTATGAATATTTGTCACTTTTCCAATTCATTGATAGCAGCTGGGGTATGCTTGTGAAGAGACACAGCCTTGGGATGACTTTTTTTGAGCCTACAGTTATTACTGATGTGAAGAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTCCCATTCAGAACAGAGGATGAAGCAATTGCTCTCGCTAATAGCACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCCCTTGAATATGGAATGGTCGGTATTAACGAAGGCATAATTTCTACAGAGTTTCCTTTGAGTTGTGGGTGGTCCAAAGTAAATATGGCCTTTCCAGGGGAGGGTGGACTTCTGATTTGGGATTGCTTTGTGAGAGAAGGGGATGCTTGGCTGAGGAAGTTGGATGGTGGTTTTGGGGACCTTCATGCCAAATCTCTCCTTGAGGACCCTTTGAGGAGTGCAGGCAATGTTTTTCCTTCTTGCCTGTCCAATGTATTTCGGAATGCTATCATCCGAAGGAGGTTAAAATTTTCTTGTAGAGCTTGGCTATTGGTGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTCGGTCGGGAAGGGTCGAAATATGGCATGGACGAATATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCAACTGA 2220 44.68 MAVRAIAKARSVVRVRSTRHPLLSSPSDVLAVQKPHSPTLLIRSMSSEAQSKAARLHGSGLLRSKGLIGGKWIDAYDGKTIEVRNPANGEVITDVPLMGQRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKNEIAQLITLEQGKPLKEAVGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFANAFSKAVQNLQVGDGFSEGVVQGPLINEAAVQKVEKFLEDAITKALVAYYFTTFMFSDLAIHQILAFLNRMFPDLAIHQINRAKCSLFGIICDKEKEDDELIYLWIKRWTSNFLLEISGFFSIIMATDSSIRLPFTVSRYTSMAKEYEYLSLFQFIDSSWGMLVKRHSLGMTFFEPTVITDVKSDMLLSREEVFGPVAPLLPFRTEDEAIALANSTNAGLAAYIFTNNIQRSWRVTEALEYGMVGINEGIISTEFPLSCGWSKVNMAFPGEGGLLIWDCFVREGDAWLRKLDGGFGDLHAKSLLEDPLRSAGNVFPSCLSNVFRNAIIRRRLKFSCRAWLLVVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRN 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43168761 43182387 + Maker00000333 Lcy8g1656 640548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1656 739 FunFam Succinate-semialdehyde dehydrogenase I 78 319 - -
Lcy8g1656 739 SUPERFAMILY ALDH-like 699 737 IPR016161 GO:0016491(InterPro)
Lcy8g1656 739 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 524 611 IPR016163 GO:0016620(InterPro)
Lcy8g1656 739 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 694 736 IPR016162 GO:0016491(InterPro)
Lcy8g1656 739 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491(InterPro)
Lcy8g1656 739 Pfam Aldehyde dehydrogenase family 72 403 IPR015590 GO:0016491(InterPro)
Lcy8g1656 739 Pfam Aldehyde dehydrogenase family 531 611 IPR015590 GO:0016491(InterPro)
Lcy8g1656 739 Pfam Aldehyde dehydrogenase family 703 731 IPR015590 GO:0016491(InterPro)
Lcy8g1656 739 FunFam Aldehyde dehydrogenase, putative 703 729 - -
Lcy8g1656 739 SUPERFAMILY ALDH-like 529 617 IPR016161 GO:0016491(InterPro)
Lcy8g1656 739 CDD ALDH_F5_SSADH_GabD 83 733 - -
Lcy8g1656 739 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 613 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Lcy8g1656 739 SUPERFAMILY ALDH-like 53 404 IPR016161 GO:0016491(InterPro)
Lcy8g1656 739 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 310 IPR016162 GO:0016491(InterPro)
Lcy8g1656 739 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491(InterPro)
Lcy8g1656 739 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 403 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0806 Lcy-Chr2:7247642 Lcy8g1656 Lcy-Chr8:43168761 5.04E-69 dispersed
Lcy8g1656 Lcy-Chr8:43168761 Lcy13g1208 Lcy-Chr13:28743166 2.20E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1656 K17761 - csv:101217352 665.225