Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1657 ATGTTCCATGCCACCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGACTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGACCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTGGGAAAGCAACCCCACAAGGAATTCAACGACCAATCAATAAAGGATGGCATGAGAGCTTCAGCTTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTTCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCTCCGCCTCCGCCGCCGGACCTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTCGTTTCAGACGCCGCCATCAAAGACTTCATTTCCCCTCCTCCTCCTCACACTTTCCCTCCTTTTCAAGACATCAACAACCTATTCACCTCCGAGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCGGTCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCTCCCCAGCCACCCTAGCTCCACCGCCGCCGTCCATCGGTGGCCCGACCGACTTGGACCCTCTTCAGCTGGAAATGTATGAATCTAAGCCACCGCCGCCACCACCACCACCACTGCTCAGCGTTGGCAACGACACGATGAATGAGAAGAAGTTCGACATGTCGTTAAAGCTCGAGAGGCCATCGCCGCGGCAGTCGTAG 1002 54.89 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASASAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPPHTFPPFQDINNLFTSEPPPPPPLIDCLKKPGPFISGAGKTPIFWPDDLRLQDLGTSPATLAPPPPSIGGPTDLDPLQLEMYESKPPPPPPPPLLSVGNDTMNEKKFDMSLKLERPSPRQS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43186277 43189655 + Maker00000550 Lcy8g1657 640549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1657 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 1 26 - -
Lcy8g1657 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 187 IPR046955 GO:0003700(InterPro)
Lcy8g1657 333 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 1 17 - -
Lcy8g1657 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Lcy8g1657 333 Gene3D - 32 90 - -
Lcy8g1657 333 FunFam Myb family transcription factor 32 90 - -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 294 308 - -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 262 333 - -
Lcy8g1657 333 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Lcy8g1657 333 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1657 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1775 Lcy-Chr11:41555518 Lcy8g1657 Lcy-Chr8:43186277 4.51E-43 dispersed
Lcy1g2290 Lcy-Chr1:35159912 Lcy8g1657 Lcy-Chr8:43186277 3.13E-18 dispersed
Lcy2g1608 Lcy-Chr2:22847563 Lcy8g1657 Lcy-Chr8:43186277 3.44E-18 dispersed
Lcy4g0042 Lcy-Chr4:733324 Lcy8g1657 Lcy-Chr8:43186277 1.30E-70 dispersed
Lcy5g0720 Lcy-Chr5:9996945 Lcy8g1657 Lcy-Chr8:43186277 1.05E-08 dispersed
Lcy5g0721 Lcy-Chr5:10000678 Lcy8g1657 Lcy-Chr8:43186277 3.12E-12 dispersed
Lcy8g1657 Lcy-Chr8:43186277 Lcy9g1476 Lcy-Chr9:39833580 5.80E-15 dispersed
Lcy8g1657 Lcy-Chr8:43186277 Lcy11g0853 Lcy-Chr11:25350619 6.46E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20556 None None None None Lcy TF