Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1657 ATGTTCCATGCCACCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGACTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGACCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTGGGAAAGCAACCCCACAAGGAATTCAACGACCAATCAATAAAGGATGGCATGAGAGCTTCAGCTTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTTCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCTCCGCCTCCGCCGCCGGACCTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTCGTTTCAGACGCCGCCATCAAAGACTTCATTTCCCCTCCTCCTCCTCACACTTTCCCTCCTTTTCAAGACATCAACAACCTATTCACCTCCGAGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCGGTCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCTCCCCAGCCACCCTAGCTCCACCGCCGCCGTCCATCGGTGGCCCGACCGACTTGGACCCTCTTCAGCTGGAAATGTATGAATCTAAGCCACCGCCGCCACCACCACCACCACTGCTCAGCGTTGGCAACGACACGATGAATGAGAAGAAGTTCGACATGTCGTTAAAGCTCGAGAGGCCATCGCCGCGGCAGTCGTAG 1002 54.89 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASASAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPPHTFPPFQDINNLFTSEPPPPPPLIDCLKKPGPFISGAGKTPIFWPDDLRLQDLGTSPATLAPPPPSIGGPTDLDPLQLEMYESKPPPPPPPPLLSVGNDTMNEKKFDMSLKLERPSPRQS 333
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 43186277 43189655 + Maker00000550 Lcy8g1657 640549
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1657 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 1 26 - -
Lcy8g1657 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 187 IPR046955 GO:0003700(InterPro)
Lcy8g1657 333 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 1 17 - -
Lcy8g1657 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Lcy8g1657 333 Gene3D - 32 90 - -
Lcy8g1657 333 FunFam Myb family transcription factor 32 90 - -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 294 308 - -
Lcy8g1657 333 MobiDBLite consensus disorder prediction 262 333 - -
Lcy8g1657 333 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Lcy8g1657 333 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1775 Lcy-Chr11:41555518 Lcy8g1657 Lcy-Chr8:43186277 4.51E-43 dispersed
Lcy1g2290 Lcy-Chr1:35159912 Lcy8g1657 Lcy-Chr8:43186277 3.13E-18 dispersed
Lcy2g1608 Lcy-Chr2:22847563 Lcy8g1657 Lcy-Chr8:43186277 3.44E-18 dispersed
Lcy4g0042 Lcy-Chr4:733324 Lcy8g1657 Lcy-Chr8:43186277 1.30E-70 dispersed
Lcy5g0720 Lcy-Chr5:9996945 Lcy8g1657 Lcy-Chr8:43186277 1.05E-08 dispersed
Lcy5g0721 Lcy-Chr5:10000678 Lcy8g1657 Lcy-Chr8:43186277 3.12E-12 dispersed
Lcy8g1657 Lcy-Chr8:43186277 Lcy9g1476 Lcy-Chr9:39833580 5.80E-15 dispersed
Lcy8g1657 Lcy-Chr8:43186277 Lcy11g0853 Lcy-Chr11:25350619 6.46E-35 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20556 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1657 - - - 0.0