Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1657 | ATGTTCCATGCCACCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGACTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGACCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTGGGAAAGCAACCCCACAAGGAATTCAACGACCAATCAATAAAGGATGGCATGAGAGCTTCAGCTTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTTCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCTCCGCCTCCGCCGCCGGACCTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTCGTTTCAGACGCCGCCATCAAAGACTTCATTTCCCCTCCTCCTCCTCACACTTTCCCTCCTTTTCAAGACATCAACAACCTATTCACCTCCGAGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCGGTCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCTCCCCAGCCACCCTAGCTCCACCGCCGCCGTCCATCGGTGGCCCGACCGACTTGGACCCTCTTCAGCTGGAAATGTATGAATCTAAGCCACCGCCGCCACCACCACCACCACTGCTCAGCGTTGGCAACGACACGATGAATGAGAAGAAGTTCGACATGTCGTTAAAGCTCGAGAGGCCATCGCCGCGGCAGTCGTAG | 1002 | 54.89 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASASAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPPHTFPPFQDINNLFTSEPPPPPPLIDCLKKPGPFISGAGKTPIFWPDDLRLQDLGTSPATLAPPPPSIGGPTDLDPLQLEMYESKPPPPPPPPLLSVGNDTMNEKKFDMSLKLERPSPRQS | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 43186277 | 43189655 | + | Maker00000550 | Lcy8g1657 | 640549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1657 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Lcy8g1657 | 333 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lcy8g1657 | 333 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 187 | IPR046955 | GO:0003700(InterPro) | |
Lcy8g1657 | 333 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
Lcy8g1657 | 333 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Lcy8g1657 | 333 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Lcy8g1657 | 333 | Gene3D | - | 32 | 90 | - | - | |
Lcy8g1657 | 333 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Lcy8g1657 | 333 | MobiDBLite | consensus disorder prediction | 294 | 308 | - | - | |
Lcy8g1657 | 333 | MobiDBLite | consensus disorder prediction | 262 | 333 | - | - | |
Lcy8g1657 | 333 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Lcy8g1657 | 333 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1775 | Lcy-Chr11:41555518 | Lcy8g1657 | Lcy-Chr8:43186277 | 4.51E-43 | dispersed | |
Lcy1g2290 | Lcy-Chr1:35159912 | Lcy8g1657 | Lcy-Chr8:43186277 | 3.13E-18 | dispersed | |
Lcy2g1608 | Lcy-Chr2:22847563 | Lcy8g1657 | Lcy-Chr8:43186277 | 3.44E-18 | dispersed | |
Lcy4g0042 | Lcy-Chr4:733324 | Lcy8g1657 | Lcy-Chr8:43186277 | 1.30E-70 | dispersed | |
Lcy5g0720 | Lcy-Chr5:9996945 | Lcy8g1657 | Lcy-Chr8:43186277 | 1.05E-08 | dispersed | |
Lcy5g0721 | Lcy-Chr5:10000678 | Lcy8g1657 | Lcy-Chr8:43186277 | 3.12E-12 | dispersed | |
Lcy8g1657 | Lcy-Chr8:43186277 | Lcy9g1476 | Lcy-Chr9:39833580 | 5.80E-15 | dispersed | |
Lcy8g1657 | Lcy-Chr8:43186277 | Lcy11g0853 | Lcy-Chr11:25350619 | 6.46E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20556 | None | None | None | None | Lcy | TF |
Pathway information
