Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1666 ATGAGGTTAATGGCAATGGCTTCCTTTGCCCTCTTCCTCCTCCTTCATCTTCATTTGGTCATGGCGGAACCTGTCGTTCAGCCTCTGATTACCACCACCTCTCTGGCGAGTCGTGCATCACCACCACCCGCTGCTCTATTGTCGCACACTTTTTATCATCGAACATGCCCAGATGTTGAGGGCATAATTCATCGTAGAGTACTTGCTTGGATCAATAAGGATTTCACGTTGGCTCCGGCTCTTATTCGCTTGCATTTTCACGATTGTGCGGTTAGGGGATGCGACGCATCGGTTCTACTAAACTATCGAAGAAGCGAAAGAAGAGCCTACGCCAGCAGAACCCTCAGGGGATTCCATGTAATCGACGATATCAAGGCCGAGCTCGAGCGAAAATGCCCTAAAACCGTCTCCTGCTCCGACATCCTCACCGCCGCCGCCAGAGACGCCACCATTCTCGCCGGAGGTCCGTTCTGGGAGGTTCCTTTTGGCCGTAAAGACGGAAGAATCTCCATCGCCGCCGAAGCAGAGCGCGTTCCTCAGGGCCATGAAAACGTCACCGCTTTGATCGACTACTTCCGAAATCTAGGGCTCGACGTCCTCGATTTGGTCGCCCTCTCCGGCGCCCACACCATCGGCCGAGCCGCCTGCCACACCTTCAAAGACAGACTCTACAACTTCAACCGGACTCGGAAGCCCGACCCGATTCTGAAACCTCCATTTCTGAATTTGCTTCGAAGGCAGTGTAAGAACGATACGGACCTCGTTTTTCTCGACGCGACGACTCCAAAAATGTTCGATACTGCTTACTTTACGAACCTTGAGAAGAAATTAGGGCTTCTTTCGACGGATCAAGCACTGTTCTCGGATGAAAGAACTTCTTCGTTTGTGGATTTGATGGCGAATCAGCCGTTTCTGTTTGATAGCCAATTCGCGTCGTCGATGGTGAAATTGGGGAATGTGGGAGTGCTCACGAGGAAAAATGAAGGCGAAATTCGAGTCAATTGCAATTTCGTCAATCCCAGAAGGAAGTGA 1032 51.26 MRLMAMASFALFLLLHLHLVMAEPVVQPLITTTSLASRASPPPAALLSHTFYHRTCPDVEGIIHRRVLAWINKDFTLAPALIRLHFHDCAVRGCDASVLLNYRRSERRAYASRTLRGFHVIDDIKAELERKCPKTVSCSDILTAAARDATILAGGPFWEVPFGRKDGRISIAAEAERVPQGHENVTALIDYFRNLGLDVLDLVALSGAHTIGRAACHTFKDRLYNFNRTRKPDPILKPPFLNLLRRQCKNDTDLVFLDATTPKMFDTAYFTNLEKKLGLLSTDQALFSDERTSSFVDLMANQPFLFDSQFASSMVKLGNVGVLTRKNEGEIRVNCNFVNPRRK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43272899 43275012 - Maker00000762 Lcy8g1666 640558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1666 343 PANTHER - 40 339 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 Pfam Peroxidase 66 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 FunFam Peroxidase 50 189 - -
Lcy8g1666 343 SUPERFAMILY Heme-dependent peroxidases 47 340 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 CDD secretory_peroxidase 47 338 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g1666 343 ProSiteProfiles Plant heme peroxidase family profile. 46 339 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 ProSitePatterns Peroxidases active site signature. 78 89 IPR019794 GO:0004601(InterPro)
Lcy8g1666 343 Gene3D - 50 339 - -
Lcy8g1666 343 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Haem peroxidase superfamily signature 136 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Haem peroxidase superfamily signature 78 92 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Haem peroxidase superfamily signature 154 166 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Lcy8g1666 343 Gene3D Peroxidase, domain 2 179 317 - -
Lcy8g1666 343 PRINTS Plant peroxidase signature 135 145 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 116 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 80 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 154 169 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 56 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1666 343 FunFam Peroxidase 179 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2086 Lcy-Chr5:43952781 Lcy8g1666 Lcy-Chr8:43272899 6.24E-132 dispersed
Lcy8g1666 Lcy-Chr8:43272899 Lcy8g2147 Lcy-Chr8:47606931 8.82E-76 dispersed
Lcy8g1666 Lcy-Chr8:43272899 Lcy1g1007 Lcy-Chr1:8994019 2.30E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1666 K00430 - csv:101204209 563.148