Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1684 ATGAAGTTCTGTTCAGCATCAGTGCTTTCTCTGTTTTTTGTTAGTATTAATCTACTTCACCTTGCCATCGCCGACCTGAAATCAGACAAGCAAGCTCTTCTTAACTTTGTATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAACGATACTACATCAATTTGCACATCTTGGGTTGGCATTACTTGCAGTGCAGATGGAACTCATGTGCTTACCCTCCGACTACCTGGGATCGGACTTGTCGGTTCAATTCCTCCTAACACTCTAGGGAAACTTGATGGCCTCAAGATTCTCAGTCTTCGTTCCAACCTCCTGAGTGGAAAAATACCGTCCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAACGTAATAACTTCTCTGGTGACTTTCCTTCTTCCCTTTCACCTACACTTAATGTATTGGATCTATCATTCAATTCATTAGAAGGAAAGATTTCAAAAGCCATCCAAAATTTGACACAACTAACTGGATTGAACCTCCAGAACAACAATCTTTCTGGTTCTATACCAGATATCAACCTCCCTAAGCTCAAGCATTTCAATATAAGTTATAACCATCTCAATGGTTCTATACCAACTTTCTTTAAGACATTCCCAAATTCATCCTTCATTGGAAATCCTTTATTATGTGGATTGCCTCTAAAATCTTGCTCCATAGTCCTATCTCCAGCTCCTAATGCTCCACCTTCACCTTCCATTTCTCAAAAGCAGAGCTCCAAAAAACTGAAGATGGGAGTCATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTTCTTGTAGTTCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGACGGTGGAGGCACCGGTGCAAGAAAAGGGAAAGTTTCTGGTGGTGGGAGAAGTGAAAAACCGAAAGAGGAGTTTGGAAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCATTTAATTTTGATCTTGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTCCTGGAGGAACCTACCACTGTTGTGGTGAAAAGATTGAAGGAAGTGGTGGTGGGGAAGAGGGAATTCGAACAACAGATGGACATAGTGGGAAGGGTCGGGCAGCACCCGAACGTCATGCCACTCCGAGCGTATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCAGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGAAAGAACTCCACTTGACTGGGACACAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCACACAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTTCTCCTAAACCAAGATGTCCATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAGGTGATCGAAGCTCGCAAACATACACACAAGTCAGATGTTTACAGCTTTGGCGTTCTTCTTCTCGAAATGCTAACTGGAAAAGCTCCCCTCCAATCACCTGGTCGTGACGAAATGGTCGATCTTCCTCGGTGGGTCCAGTCGGTTGTGAGGGAGGAATGGACAGCCGAGGTTTTCGATGTTGAGCTAATGAGGTATCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAGATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAACATGGACGAAGTAGTTAGAATGATCGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCCAAGGACTCAAATGTGCAGACCCCATGA 1893 44.06 MKFCSASVLSLFFVSINLLHLAIADLKSDKQALLNFVSSVPHRRSLNWNDTTSICTSWVGITCSADGTHVLTLRLPGIGLVGSIPPNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLQYLYLQRNNFSGDFPSSLSPTLNVLDLSFNSLEGKISKAIQNLTQLTGLNLQNNNLSGSIPDINLPKLKHFNISYNHLNGSIPTFFKTFPNSSFIGNPLLCGLPLKSCSIVLSPAPNAPPSPSISQKQSSKKLKMGVIIAIAVGGFFLLFLVVLFVVLCCLKKKDGGGTGARKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDTRVKIALATAKGIAHIHTVGGPKFTHGNIKASNVLLNQDVHACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43400948 43407330 - Maker00000954 Lcy8g1684 640576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1684 630 MobiDBLite consensus disorder prediction 296 310 - -
Lcy8g1684 630 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lcy8g1684 630 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Lcy8g1684 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lcy8g1684 630 CDD STKc_IRAK 343 606 - -
Lcy8g1684 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Lcy8g1684 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Lcy8g1684 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Lcy8g1684 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1684 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Lcy8g1684 630 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1684 630 PANTHER OS05G0588300 PROTEIN 15 620 IPR050994 -
Lcy8g1684 630 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Lcy8g1684 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515(InterPro)
Lcy8g1684 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Lcy8g1684 630 MobiDBLite consensus disorder prediction 606 621 - -
Lcy8g1684 630 MobiDBLite consensus disorder prediction 285 310 - -
Lcy8g1684 630 FunFam pollen receptor-like kinase 1 305 412 - -
Lcy8g1684 630 SUPERFAMILY L domain-like 37 226 - -
Lcy8g1684 630 Gene3D Ribonuclease Inhibitor 22 84 IPR032675 -
Lcy8g1684 630 Gene3D Ribonuclease Inhibitor 85 230 IPR032675 -
Lcy8g1684 630 MobiDBLite consensus disorder prediction 606 630 - -
Lcy8g1684 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lcy8g1684 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1630 Lcy-Chr1:16652898 Lcy8g1684 Lcy-Chr8:43400948 8.86E-234 dispersed
Lcy2g0786 Lcy-Chr2:6971897 Lcy8g1684 Lcy-Chr8:43400948 3.63E-161 dispersed
Lcy5g2369 Lcy-Chr5:46513497 Lcy8g1684 Lcy-Chr8:43400948 5.60E-128 dispersed
Lcy6g0106 Lcy-Chr6:993662 Lcy8g1684 Lcy-Chr8:43400948 2.10E-143 dispersed
Lcy7g0488 Lcy-Chr7:4334786 Lcy8g1684 Lcy-Chr8:43400948 2.22E-111 dispersed
Lcy7g1037 Lcy-Chr7:11061369 Lcy8g1684 Lcy-Chr8:43400948 4.08E-72 dispersed
Lcy7g1283 Lcy-Chr7:16925236 Lcy8g1684 Lcy-Chr8:43400948 7.12E-69 dispersed
Lcy8g1684 Lcy-Chr8:43400948 Lcy9g1757 Lcy-Chr9:42775728 1.65E-66 dispersed
Lcy8g1684 Lcy-Chr8:43400948 Lcy4g2143 Lcy-Chr4:47944602 1.14E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66132 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1684 - - - 0.0