Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1686 | ATGGATCTCCTCCTTCTGGAGAAGACTCTAATCGGCCTCTTCGTCGCGGTGGTTCTCGCCATTGCCATATCCAAACTCCGCGGCAAGCGGTTCAAGCTTCCGCCGGGGCCGTTGCCGGTGCCGATCTTCGGTAACTGGCTCCAAGTCGGTGATGATTTGAACCACCGCAATCTGACGGATCTCGCCAAGAAATTCGGCGATATCTTCTTGCTTCGGATGGGACAGAGGAACCTCGTGGTGGTTTCCTCGCCGGAACTGGCCAAGGAAGTGCTCCACACTCAGGGAGTCGAGTTCGGATCTCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGAAAAGGTCAGGATATGGTTTTCACCGTCTACGGCGAGCACTGGAGGAAAATGAGACGGATCATGACGGTTCCGTTTTTCACCAACAAAGTGGTCCAGCAATACCGTCACGGATGGGAGGCCGAGGCCGCAAGCGTGGTGGAGGACGTGAAGAAGAATCCAGACTCGGCGACGACCGGAGTCGTTCTCCGACGGCGGTTGCAGCTTATGATGTACAACAACATGTACAGGATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTCCTCAAACTCAGGGCTCTGAACGGAGAGAGGAGCCGATTGGCGCAGAGCTTCGATTACAATTATGGCGATTTCATCCCGATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAATCTGCAAGGAAGTTAAGGAAACAAGACTCAAACTCTTCAAGGATTATTTCGTCGAGGAGAGGAAGAAACTGGCGAGTACTAAGACCACGACGAACGAGGGATTGAAATGTGCGATTGATCATATATTGGATGCGCAACAGAAGGGAGAAATCAACGAGGACAATGTGCTTTACATTGTTGAGAACATTAACGTTGCAGCGATCGAAACAACATTGTGGTCAATCGAATGGGGAATTGCCGAGCTGGTAAACCACCCTGAAATCCAAAGGAAGTTGAGGAATGAGCTCGACACCGTACTTGGACCTGGCGTCCCGATCACCGAGCCCGACACCTACAAGCTCCCCTACCTCCAGGCCGTGATCAAGGAGACCCTCCGCCTTCGCATGGCCATCCCCTTGCTCGTGCCCCACATGAACCTCCACGATGCCAAGCTCGCTGGCTACGACATTCCTGCCGAGAGCAAAATCTTAGTCAATGCCTGGTGGCTCGCCAACAACCCTGCCAACTGGAAGAACCCAGAGGAGTTCCGCCCCGAGAGGTTCTTGGAGGAGGAATCTAAGGTCGAGGCCAACGGCAACGATTTTCGATACCTTCCCTTTGGTGTCGGTCGACGAAGCTGCCCTGGCATCATCTTGGCTTTGCCGATCCTTGGCATTACAATTGGGCGTTTGGTTCAGAACTTTGAGCTCCTGCCTCCTCCTGGACAATCGAAGTTGGACACTTCAGAGAAAGGTGGGCAATTTAGCTTGCACATTTTGAAGCACTCCACCATTGTTGCTAAGCCAAGGGTTTTCTAG | 1518 | 52.24 | MDLLLLEKTLIGLFVAVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAASVVEDVKKNPDSATTGVVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFLKLRALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLASTKTTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTYKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVAKPRVF | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43438109 | 43441577 | + | Maker00001230 | Lcy8g1686 | 640578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1686 | 505 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 503 | - | GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER) | |
| Lcy8g1686 | 505 | Pfam | Cytochrome P450 | 34 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | SUPERFAMILY | Cytochrome P450 | 34 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | P450 superfamily signature | 359 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | CDD | CYP73 | 63 | 496 | - | - | |
| Lcy8g1686 | 505 | Gene3D | Cytochrome P450 | 23 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 358 | 376 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g1686 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy8g1686 | 505 | FunFam | Trans-cinnamate 4-monooxygenase | 23 | 497 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1581 | Lcy-Chr4:39871351 | Lcy8g1686 | Lcy-Chr8:43438109 | 2.91E-233 | dispersed | |
| Lcy8g1686 | Lcy-Chr8:43438109 | Lcy1g0743 | Lcy-Chr1:6387256 | 4.27E-74 | dispersed | |
| Lcy8g1686 | Lcy-Chr8:43438109 | Lcy4g1582 | Lcy-Chr4:39876299 | 1.31E-238 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g1686 | K00487 | - | csv:101221846 | 968.378 |