Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1689 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCGAATTCCAATCAAATTCCTCCACTGAATGTTGCAACGCCGCCGCAGAAGGCTCACAAACCGCCGACGGTGGCCAATGCGACGGCGTCCTCGTCGATGTTTGCGAATGCGGGTGCCGGGAATGGCTCGTTTGTGCCTAGAGCTGGTTCTCATCATCGGAGGGCTCATTCGGAAGTTAGCTTCCGGTTGCCGGAGGACATGATGGATCTGTCCGGGTCGGATCCGTTCAATGGCGGCTCGTCGACGGCTAGTTTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTCGCGGATCATAATGCCAATGGCGGAAGTGAAGGCGCTGGTGGTAGTGAGGGAGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACGACGTCGTCGTCGAGCATGTTTGGGGAGATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGACCAGTGACCCCAAACGCGCCAAAAGGATATTGGCAAATCGACAATCTGCTGCTCGATCGAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAGGTGCAGACTCTTCAAACAGAAGCAACTACTCTATCAGCGCAATTGACTTTGTTCCAGCGAGATACAACGGGTCTGAGTACTGAGAATACAGAGCTTAAGCTTCGGTTGCAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTCTGAACGAAGCGTTAAAGAAGGAAGTCGAGCGGCTTAAAATCGCTACCGGGGAAATGATGAGCCCTTCTGAGTCATTTAACCTAGGAATGCATCACATGGCATACGCCCCATCGTCTTTCATTCAACTTTCACAGCAACCAGGATCTATAGGCCATCAGAATATGCAAATGCCACCATATAGTCATTCCCCATCTAACATGTCTAGCCACCCTTTACATCCATCAGATTCTCATTCTCTCTCAGAGGTTCTGCAGAGCGATCCTCTCGGTCGATTACAGGGTCTCGACATTAGTAGTAAAGGATCGTCGCTTGTGAAATCTGAGGGCCCCTCACTCTCTGCTAGTGAGAGCAGTACTACCTTTTGA 1164 50.6 MQDPAPSNPIHTPNSNQIPPLNVATPPQKAHKPPTVANATASSSMFANAGAGNGSFVPRAGSHHRRAHSEVSFRLPEDMMDLSGSDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFADHNANGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWTSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQPGSIGHQNMQMPPYSHSPSNMSSHPLHPSDSHSLSEVLQSDPLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43466071 43469282 + Maker00000493 Lcy8g1689 640581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1689 387 Coils Coil 253 284 - -
Lcy8g1689 387 Gene3D - 188 241 - -
Lcy8g1689 387 FunFam probable transcription factor PosF21 188 241 - -
Lcy8g1689 387 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 36 339 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy8g1689 387 Pfam bZIP transcription factor 189 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1689 387 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1689 387 MobiDBLite consensus disorder prediction 362 387 - -
Lcy8g1689 387 Coils Coil 205 232 - -
Lcy8g1689 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1689 387 MobiDBLite consensus disorder prediction 1 69 - -
Lcy8g1689 387 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1689 387 MobiDBLite consensus disorder prediction 35 50 - -
Lcy8g1689 387 MobiDBLite consensus disorder prediction 311 352 - -
Lcy8g1689 387 SUPERFAMILY Leucine zipper domain 189 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g1689 387 MobiDBLite consensus disorder prediction 1 23 - -
Lcy8g1689 387 MobiDBLite consensus disorder prediction 311 387 - -
Lcy8g1689 387 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1689 Lcy-Chr8:43466071 Lcy9g0965 Lcy-Chr9:32325539 2.17E-41 dispersed
Lcy7g1073 Lcy-Chr7:11487583 Lcy8g1689 Lcy-Chr8:43466071 7.40E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20560 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1689 - - - 0.0