Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1692 ATGTTCAAGAATACTCGAGCTGGGAATCCCAGCAGCAACCTTCACGATTGTAACTCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTCTGGGAAAAGGGGCCATGAAAACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCATGGAGCCAGGTGAAGCTCAATGAAGTCCTCCGATCGCCCGATGATTTGCAGCGGCTGTATTCGGAGGTTCACCTACTTAGCACACTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGATGTTGATCGCAAAACGTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATATGGGAAGAAATATAGGCAAGTTGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATCCTGCAGGGGCTCATTTATTTGCACGAACATGATCCTCCGATAATACACCGAGATTTGAAGTGCGATAATATCTTTGTAAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGCTCCAGATCTGCTCATAGTGTTATAGGCACACCAGAGTTTATGGCGCCAGAATTATACGAGGAAAATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTGGAGATGCTTACTGCTGAGTATCCGTACAGCGAGTGTTCTAATCCTGCACAGATTTATAAGAAAGTCACGTCGGGGAAGTTGCCAGCAGCATTGTACAAGATTCAAGATGTGGAAGCGCAGAGGTTTATTAAGAAATGCTTGGCACCGGTTTCAATGAGGGCGTCTGCGAAAGAACTGTTGCTTGATCCTTTTCTCACAGTTGATGGAGATCGATCTTCATCGAAGGAGAGGAGTCAAAAACAGAAGCCATTTCTAAATGCCAAAGAGATGGAAAACTTGCATTTGGGTGAAGGTTTAAGCAGGACGAACATGACGATCACGGGGAAGCTGAACCCCGAAGATGATACTCTCTTTCTCAGAGTTCAGATTGCAGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAATGAACGACACAGCATTAGATGTGGCGATGGAGATGGTGAAAGAGTTGGAAATCTCTGATTGGGAGCCGTTCGAAATAGCAGACATGATCGAGGGAGAGATATCGGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTATCCAACCATAGCCTCAGCTTCGGTTATGCAGAAGAAGACGATAATGCATCTCATCATACTTTCCGCTCGGTCTCCTCATCGTCCCAAGCAACAACTTTGGGTCTCGTCGCCTCCCCAAGAACAAATCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGATGACGCATTTGACGATAGCAGTTCACAGTGTTCATCGGCATCGGGAACATACTCCAACTTGAATTACATCAGCAACGACGAGTACGAGACCAGTATGAGTTCGGTCCGAATAGATCAACACAACAACATCAATAAGATTCACAACTCCTCAAGATTTTGTCCCATTGAGAACCGCAAAAACAAGGATTTCTTGGCTGGACTTTTATACAAGCAGAGCCAATGTGCGGTAGGGCCATCTCAAGGAGCTGCCTCTAGTCGCAAAGACAAGAGGGGAATGGATGGCCGTAGATTAACAAGAAACAGATCACTAGTTGATGTACATAGCCAATTGCTTCATCGCTCGTTGGTCGAAGAAGTGAATAGAAGACGGTTATTCAAGACGGTTGGAGCGGTTGAAAGCATCGGTTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTCTCGAGTAGGCAACCGATCGGGAACCGTAGTAGCGATGTAGCGAGAACGAGGAGAAATGACGATATTAGGCAAGATGTTGGAAGGAGAACATGA 1932 45.45 MFKNTRAGNPSSNLHDCNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPDDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRQVDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTAEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVEAQRFIKKCLAPVSMRASAKELLLDPFLTVDGDRSSSKERSQKQKPFLNAKEMENLHLGEGLSRTNMTITGKLNPEDDTLFLRVQIADKDGSLRNIYFPFDIMNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHSLSFGYAEEDDNASHHTFRSVSSSSQATTLGLVASPRTNQNISNGFSWFPDDAFDDSSSQCSSASGTYSNLNYISNDEYETSMSSVRIDQHNNINKIHNSSRFCPIENRKNKDFLAGLLYKQSQCAVGPSQGAASSRKDKRGMDGRRLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRQPIGNRSSDVARTRRNDDIRQDVGRRT 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43517851 43522458 + Maker00000230 Lcy8g1692 640584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1692 643 MobiDBLite consensus disorder prediction 610 643 - -
Lcy8g1692 643 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Lcy8g1692 643 MobiDBLite consensus disorder prediction 610 625 - -
Lcy8g1692 643 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Lcy8g1692 643 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Lcy8g1692 643 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1692 643 CDD STKc_WNK 31 291 - -
Lcy8g1692 643 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 599 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy8g1692 643 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Lcy8g1692 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1692 643 MobiDBLite consensus disorder prediction 542 564 - -
Lcy8g1692 643 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Lcy8g1692 643 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1692 643 MobiDBLite consensus disorder prediction 626 643 - -
Lcy8g1692 643 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1617 Lcy-Chr1:16471122 Lcy8g1692 Lcy-Chr8:43517851 9.47E-206 dispersed
Lcy2g1808 Lcy-Chr2:29933277 Lcy8g1692 Lcy-Chr8:43517851 5.93E-128 dispersed
Lcy4g1952 Lcy-Chr4:45859161 Lcy8g1692 Lcy-Chr8:43517851 3.28E-149 dispersed
Lcy5g2185 Lcy-Chr5:44959053 Lcy8g1692 Lcy-Chr8:43517851 1.67E-142 dispersed
Lcy6g1698 Lcy-Chr6:32416849 Lcy8g1692 Lcy-Chr8:43517851 3.34E-111 dispersed
Lcy8g1367 Lcy-Chr8:40408986 Lcy8g1692 Lcy-Chr8:43517851 1.34E-109 dispersed
Lcy8g1692 Lcy-Chr8:43517851 Lcy4g0505 Lcy-Chr4:6134983 2.03E-18 dispersed
Lcy8g1692 Lcy-Chr8:43517851 Lcy13g0281 Lcy-Chr13:3072507 5.07E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66133 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1692 K08867 - csv:101203757 1180.62