Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1696 ATGCTGGAGATCGAACCCGCCTCCACCGACAACCATGCCCTCTTCGGCAAGTACGAGCTCGGCAAGGTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCGCTCCGGCCACAGCGTCGCCATCAAAGTCATCAACAAGAAGAAGATCAATGGCACCACTCTCATGTCCAACATCAAGCGCGAAATCTCCATCATGCGCCGTCTCCGCCACCCTCACATCGTCAAACTCCATGAGGTTCTTGCAACCAGATCCAAGATCTATTTCGTCATGGAGTTCGTCAAAGGCGGCGAGCTCTTCGCCAAGGTCGCCAAGGGCCGATTCAGCGAGGATTTGAGCAGGAGATTCTTCCAGCAGTTGATCTCCGCCGTTGGATTCTGCCACGCGCGTGGGATCTACCACCGCGATCTGAAGCCGGAGAATCTCCTCGTCGACGAGAATGGGAATCTCAAGGTCTCGGACTTCGGTCTCAGTGCGGTAACGGACCAGATCCGCTCCGATGGCCTTCTGCACACTCTCTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTTTGTCGAAGAAGGGCTACGACGGTGCGAAAGTCGATGTGTGGTCCTGTGGTGTGATTCTCTTCGTGTTGAACGCCGGCTACCTTCCGTTCAACGATCCGAATCTCATGGCGATGTACAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGCCGGACCTCAAGCGGTTTTTATCGCGACTTCTCGATACGAATCCACAAACGAGGATTACCATCGATGAGATTCTGAGGGATCCGTGGTTCAGAAAAGGAGCAACTAAGGAGATCAATTTCTATGATGATTACGAAATGAAATTCGAAGAGAAGGACGAATCTCAATCGACGAATTTGAACGCATTCGACATTATATCGTTCTCATCGGGTCTGGATCTGTCCGGTTTGTTCGACAACTCGCACAACGCGGTGGAGGACAGTGAGCGATTCGTATCGGCGGAGTCGCCGGAGAAGATCATGGAGAAAGTGGAGGAGTTCGCAAGGGCTGAGAATCTGAAGGTGAGGAAACAGAAGGAATTTGGAGTCGAATTGGATGGCCAGAATCGTAATTTGGTCATCGGAATCGAAATTTTCCGGTTAACCGACGGATTGGCGGTGGTGGAAGCGAGAAGAAGAAGTGGAGATTCAGAATCGTACAAGGAATTGTTGAAAAAGAAGCTGAAAGGTCATCTCACCGGCAACGAAGCTTCGACGTCGACGTCCCGACAATATTCCGGCAACCAGAACCAGTGA 1299 52.35 MLEIEPASTDNHALFGKYELGKVLGCGAFAKVYHARDLRSGHSVAIKVINKKKINGTTLMSNIKREISIMRRLRHPHIVKLHEVLATRSKIYFVMEFVKGGELFAKVAKGRFSEDLSRRFFQQLISAVGFCHARGIYHRDLKPENLLVDENGNLKVSDFGLSAVTDQIRSDGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSPDLKRFLSRLLDTNPQTRITIDEILRDPWFRKGATKEINFYDDYEMKFEEKDESQSTNLNAFDIISFSSGLDLSGLFDNSHNAVEDSERFVSAESPEKIMEKVEEFARAENLKVRKQKEFGVELDGQNRNLVIGIEIFRLTDGLAVVEARRRSGDSESYKELLKKKLKGHLTGNEASTSTSRQYSGNQNQ 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43538302 43539600 + Maker00000915 Lcy8g1696 640588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1696 432 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Lcy8g1696 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1696 432 CDD CIPK_C 302 401 - -
Lcy8g1696 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1696 432 Gene3D Kinase associated domain 1, KA1 297 415 - -
Lcy8g1696 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1696 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Lcy8g1696 432 Gene3D Phosphorylase Kinase; domain 1 4 99 - -
Lcy8g1696 432 MobiDBLite consensus disorder prediction 409 432 - -
Lcy8g1696 432 FunFam Non-specific serine/threonine protein kinase 296 416 - -
Lcy8g1696 432 FunFam Non-specific serine/threonine protein kinase 8 301 - -
Lcy8g1696 432 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Lcy8g1696 432 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lcy8g1696 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 406 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy8g1696 432 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
Lcy8g1696 432 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Lcy8g1696 432 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1696 432 MobiDBLite consensus disorder prediction 414 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1600 Lcy-Chr11:39858277 Lcy8g1696 Lcy-Chr8:43538302 4.57E-115 dispersed
Lcy1g1613 Lcy-Chr1:16365459 Lcy8g1696 Lcy-Chr8:43538302 1.60E-185 dispersed
Lcy5g0171 Lcy-Chr5:1724420 Lcy8g1696 Lcy-Chr8:43538302 4.46E-38 dispersed
Lcy8g1696 Lcy-Chr8:43538302 Lcy9g1887 Lcy-Chr9:43933927 7.39E-145 dispersed
Lcy8g1696 Lcy-Chr8:43538302 Lcy8g1697 Lcy-Chr8:43542269 2.26E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66134 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1696 - - - 0.0