Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1697 ATGGGGACACGTGCACCTTTTACTGCTGTGTCAGAATTTTATTGTAAAGAGATAGAGAGACAGACAGGGGGCGTTGCTTCTCTTCTGGATGCAGTTGAATTGCCCTGTTTTGCATTGGAGGAAAACAGTGTCATAAATCAGGAAACCCCACCTGCTCTCTGCTTTCAAACGCTCAATTTAACAAGTTATTGTGGAGTGCAAGCGCCTACTCAATCGATTGGGATGGATAATAAGCCGAGTGTGATGGTTCAAAAATATGAGTTAGGGAGATTACTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCAAGGAATACAGGAGCTAATCAAAGTGTGGCCATTAAGGTGATTGATAAGGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGAGACTCGTTAGACATCCCAATATTATACATCTGTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTCGCTAAAGGGAGGCTGAAGGAGGACGTTGCTTGGAAATACTTCTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAACCGAGTCCAAGCGTCAAGATGGGTTGCTACACACTACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGTTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCGAATTTGATGGAGATGTATAGGAAGATTGGAAGAGCGGATTACAAATGTCCTAGTTGGTTCCCTCGCGAAGCGCGGAGGCTGCTTAGTAGGATGCTTGATCCAAACCCCATTACTAGGACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGATCTAAGATGTTAAGAAGTGGAACAGAAGATGATGCTATAGCGACTGAGGATGCAGCAGGAGCATCTGAGAGTAGTGTGCCAACAGATGGAAATCGAGAGCCAGATAGACCTCCGACTTTGAATGCTTTCGATATCATCTCCCTTTCTGCCGGGTTCAATCTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTCACTTGTAGAAAACCAGCCTCTGTCATCCTCTCAAAGCTAGAAGAAATTGCTAAACTTCTCCGATTTCGAGTGCAGAAGAAGGATGCAGGCCTACTGAAGTTTGAGGCACTAACAGAGGGTAAAAAGGGCGCATTGTCCATTGATACAGAAATCTTTGAAGTTACTCCATCCTTTTATTTGGTGGAGATGAAGAAATCTAATGGGGACACATTGGAATATCAGAAGATATTGGAAGAGGACATAAGGCCAGCTCTACAGGACATTGTATGGGTTTGGCGAGGAGAGCACGAGCAGCAGCAACAACAGCCTCAGCCTCTCCAACTGCAGGATCGAGATCGGGATCGGGATCCATATCTGGGGCAAGAGGGTGCGTCACAACACAACAGCAGTAGCAACACGACGAAGAAAAACTCACAAAACCTGGGTTGGCAAGGATCTTAA 1683 43.26 MGTRAPFTAVSEFYCKEIERQTGGVASLLDAVELPCFALEENSVINQETPPALCFQTLNLTSYCGVQAPTQSIGMDNKPSVMVQKYELGRLLGQGTFAKVYYARNTGANQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALTESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRADYKCPSWFPREARRLLSRMLDPNPITRTSIAMIRQSSWFKKGLRSKMLRSGTEDDAIATEDAAGASESSVPTDGNREPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEIAKLLRFRVQKKDAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILEEDIRPALQDIVWVWRGEHEQQQQQPQPLQLQDRDRDRDPYLGQEGASQHNSSSNTTKKNSQNLGWQGS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43542269 43544876 - Maker00000316 Lcy8g1697 640589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1697 560 CDD STKc_SnRK3 85 339 - -
Lcy8g1697 560 ProSiteProfiles NAF domain profile. 380 404 IPR018451 GO:0007165(InterPro)
Lcy8g1697 560 Pfam NAF domain 382 440 IPR004041 GO:0007165(InterPro)
Lcy8g1697 560 FunFam Non-specific serine/threonine protein kinase 77 165 - -
Lcy8g1697 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1697 560 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 71 493 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy8g1697 560 Gene3D Transferase(Phosphotransferase) domain 1 77 378 - -
Lcy8g1697 560 MobiDBLite consensus disorder prediction 513 560 - -
Lcy8g1697 560 MobiDBLite consensus disorder prediction 536 560 - -
Lcy8g1697 560 Gene3D Kinase associated domain 1, KA1 380 505 - -
Lcy8g1697 560 SUPERFAMILY Protein kinase-like (PK-like) 83 341 IPR011009 -
Lcy8g1697 560 MobiDBLite consensus disorder prediction 361 382 - -
Lcy8g1697 560 SMART serkin_6 86 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1697 560 Pfam Protein kinase domain 86 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1697 560 FunFam Non-specific serine/threonine protein kinase 76 365 - -
Lcy8g1697 560 FunFam Non-specific serine/threonine protein kinase 380 504 - -
Lcy8g1697 560 CDD CIPK_C 386 500 - -
Lcy8g1697 560 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Lcy8g1697 560 ProSiteProfiles Protein kinase domain profile. 86 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0324 Lcy-Chr13:3526403 Lcy8g1697 Lcy-Chr8:43542269 1.02E-124 dispersed
Lcy5g1703 Lcy-Chr5:39519352 Lcy8g1697 Lcy-Chr8:43542269 4.22E-168 dispersed
Lcy5g1821 Lcy-Chr5:40981273 Lcy8g1697 Lcy-Chr8:43542269 1.36E-198 dispersed
Lcy8g1697 Lcy-Chr8:43542269 Lcy9g1887 Lcy-Chr9:43933927 1.95E-170 dispersed
Lcy9g1314 Lcy-Chr9:37904579 Lcy8g1697 Lcy-Chr8:43542269 7.09E-30 dispersed
Lcy8g1696 Lcy-Chr8:43538302 Lcy8g1697 Lcy-Chr8:43542269 2.26E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66135 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1697 - - - 0.0