Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1701 ATGGCGATTTCAGCTTCTTCTTCTTACAAAATGGCTTTGGCTTTAGCATTAGCCTTATTGGCAATGTGCATGGGGAGCTCCTCAGCTCAGCTCTCTCCCAACTTCTACTACGATAGCTGCCCCAAGCTCCTCGACACCGTCAGAGCCGGGATTCAATCCGCCGTGGCTAAGGAAGCTCGCATGGGCGCTTCCCTTCTCCGCCTCCACTTTCACGACTGCTTTGTTAACGGCTGTGATGGATCAATTCTTCTGGAAGATACTCCTACGTTTACAGGAGAGCAAACCGCTGGTCCCAATGACCAATCCATTAGAGGGTTCGATGTGATTGAAAGTATAAAGAAAAATGTTGAAATAGTTTGTCCCGGTGTTGTCTCTTGTGCTGATATTCTGACTCTTTCTGCTCGTGACTCCGTTGTAGCACTTGGAGGGCCAAGTTGGGAGGTGAAATTGGGAAGAAGAGATTCCCAAACAGCGAGCTTCGCCGCCGTGAGCGGTGCCATTCCTCCGCCAACCTCCACCCTCGACGCCCTTATAGATCGGTTCAACGCAAAAGGCCTTTCCCCACGTGACTTGGTTGCCTTATCTGGGGCCCACACGATCGGACAAGCAAAGTGTTTGTTTTTCAAGAACCGTATATACAACGAGAGCAATATCGACGAGTCGTTTGCCGAGGAGAGACGAGAGAATTGCCCAGTAAATGGAGGAGACGACAATCGTGAACCTCTGGACTTTAGAACCCCGAATCTTTTTGACAACTACTACTACAAGAACCTTTTGGATCAAAAGGGTCTACTTCGGTCCGATCAGGTGCTACACGATGGCGGATCCACAGATCCCTTGGTTGAACTCTACGGCGATGACAGTGAAGCCTTCGAGTCTGACTTTGTCACGGCTATGATCAAGATGGGCGACATTGAACCGCTCACTGGATCGCAGGGCGAGATTCGAACAGTTTGTAGCCGACCAAACTGA 972 50.0 MAISASSSYKMALALALALLAMCMGSSSAQLSPNFYYDSCPKLLDTVRAGIQSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAGPNDQSIRGFDVIESIKKNVEIVCPGVVSCADILTLSARDSVVALGGPSWEVKLGRRDSQTASFAAVSGAIPPPTSTLDALIDRFNAKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNESNIDESFAEERRENCPVNGGDDNREPLDFRTPNLFDNYYYKNLLDQKGLLRSDQVLHDGGSTDPLVELYGDDSEAFESDFVTAMIKMGDIEPLTGSQGEIRTVCSRPN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43574041 43575586 - Maker00001528 Lcy8g1701 640593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1701 323 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Lcy8g1701 323 PANTHER PEROXIDASE 72-RELATED 16 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 CDD secretory_peroxidase 30 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 Gene3D - 34 320 - -
Lcy8g1701 323 ProSiteProfiles Plant heme peroxidase family profile. 30 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 Pfam Peroxidase 47 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 SUPERFAMILY Heme-dependent peroxidases 30 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1701 323 FunFam Peroxidase 168 302 - -
Lcy8g1701 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lcy8g1701 323 Gene3D Peroxidase, domain 2 168 302 - -
Lcy8g1701 323 FunFam Peroxidase 34 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0279 Lcy-Chr4:3425158 Lcy8g1701 Lcy-Chr8:43574041 2.39E-71 dispersed
Lcy8g1698 Lcy-Chr8:43551438 Lcy8g1701 Lcy-Chr8:43574041 1.40E-163 dispersed
Lcy8g1699 Lcy-Chr8:43560889 Lcy8g1701 Lcy-Chr8:43574041 2.66E-168 dispersed
Lcy8g1701 Lcy-Chr8:43574041 Lcy8g2142 Lcy-Chr8:47576073 1.39E-90 dispersed
Lcy8g1701 Lcy-Chr8:43574041 Lcy8g1703 Lcy-Chr8:43592359 1.62E-103 proximal
Lcy8g1700 Lcy-Chr8:43569788 Lcy8g1701 Lcy-Chr8:43574041 1.42E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1701 K00430 - csv:101204245 541.576