Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1703 ATGGCAGCCCTTCGCTCTCTTTTGCTGTGTGTTTTTGTGTTATCAGCTGCCCTGAGCCATAGCCATAGCCATGCACAGCTGACTCCAGACTTCTACAAGAAAGTCTGCCCCAACGCCTTGCCGACCATCAAATCCGTCGTCTGGAAGGCCATCAAACGCGAGCCTCGTATGGGAGCGTCGCTCTTACGTCTCCATTTCCACGACTGCTTTGTCAACGGTTGCGATGGGTCGGTTTTGTTGGACGACACCGCTACCTTCACCGGAGAAAAGACGGCCAATCCTAATAGAAACTCAGTTAGAGGATTCGAAGTTGTCGACAAGATTAAGAAACAAGTCGACAAAGCTTGCAAAGGGAACGTTGTGTCTTGTGCTGACATCTTAGCTGTTGCTGCTCGTGACTCTGTTGCTATTCTTGGTGGGCTAAACTACAAAGTACTACTAGGAAGAAGAGATGCAAGAACAGCAAGCTTAAATGATGCCAACACAAATCTCCCTCCGCCATTTTTCAACTTCGCACAGCTTCTATCCAACTTCCAATCTCATGGCCTCGACCTCAAAGACCTCATCGTGTTATCGGCCGGCCACACCCTCGGCTTCGCTCGATGCACCACATTCCGCTCTAGAATATACAACGACACCAACATCGACCCGAGGTTCGCAGCGGCGCTGCAAGCCAAGTGCCCGCCGAGCGGCAACGATGGCAAACTGCAGGGCCTTGACATGACTCCAAATTTCTTCGACAATGCCTACTTCAAGGCCTTGTTGCAGAACAAGGGCCTTCTCCATTCCGACCAGGAACTCTTCGGCGGCGGCAATAGCGACAGCGATAATCTGGTGTCGTTCTACAGTGGATATCCAGTTGAATTTAGAAAGGACTTTGCTTCTTCCATGATCAAAATGGGTAATATGAATCCACTTACAGGAACTGATGGGGAAGTTAGAGTCAACTGCAGAGTTGTCAATTGA 966 49.69 MAALRSLLLCVFVLSAALSHSHSHAQLTPDFYKKVCPNALPTIKSVVWKAIKREPRMGASLLRLHFHDCFVNGCDGSVLLDDTATFTGEKTANPNRNSVRGFEVVDKIKKQVDKACKGNVVSCADILAVAARDSVAILGGLNYKVLLGRRDARTASLNDANTNLPPPFFNFAQLLSNFQSHGLDLKDLIVLSAGHTLGFARCTTFRSRIYNDTNIDPRFAAALQAKCPPSGNDGKLQGLDMTPNFFDNAYFKALLQNKGLLHSDQELFGGGNSDSDNLVSFYSGYPVEFRKDFASSMIKMGNMNPLTGTDGEVRVNCRVVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43592359 43594060 + Maker00001122 Lcy8g1703 640595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1703 321 FunFam Peroxidase 165 300 - -
Lcy8g1703 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Lcy8g1703 321 FunFam Peroxidase 30 169 - -
Lcy8g1703 321 SUPERFAMILY Heme-dependent peroxidases 26 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 Pfam Peroxidase 44 270 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 Gene3D - 30 318 - -
Lcy8g1703 321 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Lcy8g1703 321 PANTHER PEROXIDASE 72-RELATED 10 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 Gene3D Peroxidase, domain 2 165 300 - -
Lcy8g1703 321 CDD secretory_peroxidase 26 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1703 321 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0695 Lcy-Chr4:8358550 Lcy8g1703 Lcy-Chr8:43592359 6.45E-113 dispersed
Lcy6g0931 Lcy-Chr6:9470773 Lcy8g1703 Lcy-Chr8:43592359 1.95E-103 dispersed
Lcy8g1700 Lcy-Chr8:43569788 Lcy8g1703 Lcy-Chr8:43592359 6.07E-94 dispersed
Lcy8g1703 Lcy-Chr8:43592359 Lcy8g2142 Lcy-Chr8:47576073 2.55E-98 dispersed
Lcy8g1701 Lcy-Chr8:43574041 Lcy8g1703 Lcy-Chr8:43592359 1.62E-103 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1703 K00430 - csv:101204979 521.931