Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1705 | ATGGAGTTTTTCTTCTCTGCTTCTGTTGAAGATCCCACCTACGGCCGCCGGAGACTGCCGGAGCGTACGGCGCCGCCCATGTCTAAGCTCATTTCCACGGAAAATCCGCCATTGTTGCCGGCCCTGTCTCCGCCTCTTTTTTCTCCTTCTTCGTTCTTCACTATCCCTCCTGGGATCAGCCCCACCCAGCTTCTTGATTCCCCTGTTTTTCTTAACCCTTCTAATATTCCGCCATCGGCGACTACCGGAGCAATTTCCGCCGGAGACTTGACCGGAAACAGAAACAATTCCGGCCACCACCAACAGAACATCAAACAAGAACACAACAACTTACCTGACTTCTCATTTTCTCGTACCCATCCCACAAAATCATCCTCAATGTTTCAATCATTTTCAACACAGCAAAACCGGCCATGGAGTTCTCAACCCGAACCCCCCGTCAGTTTCCCGCCGGAAACCACCATCTCCGGCGGCTCCAAACGGGATCACCGCCCGCAATCGCAATCGAGAAACAGAGCATCCGACGACGGGTTTAACTGGAGAAAATACGGCCAAAAACTGGTAAAAGGAAGCGAAAATCCCAGAAGCTATTACAAATGTACACATCCAAATTGCCCTGTGAGAAAGCAAGTCGAAAGATCATTGAATGGTCAAATTACAGAAATCGTTTACAAAAGCAAACACAACCATCCAAAACCAGAGTTCACAAGAAGATCGTCATCTTCTTCTTGTTCTTCTTCATCTTCATGGTTATCGGAAGCTTTGCCTCAAACGATGGCGGCGGAGCCAAAGCATCCGGCGGCCTCTGATTCCATGCCGACGCCGGAGAACTCTTCGATTACGATCGGCGACGATGAATCTGATGAAGCCGATGCAAAAAGATGGAAAAGTGAGAGTGAAAATGAAATGGTGTCGGCGGCGGGAGGGAAGACGGTGAGAGAACAGAGAGTTGTGGTTCAAACGATTAGTAATGTGGATAAATTGGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTTAGGGGAAATCCAAATCCAAGAAGCTACTACAAATGCACGTACGCAGGCTGTGGAGTGAGGAAGCACATAGAGAGAGCATCCCACGATTTAAGGGCAGTCATCACTACCTACGAAGGCAAGCACAACCACGAAATTCCGGCAGCCCGTGGCGGCGGTGGCGGCAGACCGGTACTCAATAATCACGGCAGCAGCAACGACGGTGCATCGAACAACGGCAATGGCGACCGACGACCGAGTTCAGAGATCTCTGGTGGCGATAATGGATTATCAAACATGTTGTGGAGGACCAAAGAAGAGGCAGCCGATGACATTTTCCAGTCGTTATTAGACTGA | 1359 | 49.45 | MEFFFSASVEDPTYGRRRLPERTAPPMSKLISTENPPLLPALSPPLFSPSSFFTIPPGISPTQLLDSPVFLNPSNIPPSATTGAISAGDLTGNRNNSGHHQQNIKQEHNNLPDFSFSRTHPTKSSSMFQSFSTQQNRPWSSQPEPPVSFPPETTISGGSKRDHRPQSQSRNRASDDGFNWRKYGQKLVKGSENPRSYYKCTHPNCPVRKQVERSLNGQITEIVYKSKHNHPKPEFTRRSSSSSCSSSSSWLSEALPQTMAAEPKHPAASDSMPTPENSSITIGDDESDEADAKRWKSESENEMVSAAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVRGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGGGGRPVLNNHGSSNDGASNNGNGDRRPSSEISGGDNGLSNMLWRTKEEAADDIFQSLLD | 452 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43605441 | 43609663 | + | Maker00001358 | Lcy8g1705 | 640597 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1705 | 452 | SMART | WRKY_cls | 174 | 232 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | SMART | WRKY_cls | 328 | 387 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 157 | 179 | - | - | |
| Lcy8g1705 | 452 | FunFam | WRKY transcription factor 57 | 314 | 388 | - | - | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 236 | 255 | - | - | |
| Lcy8g1705 | 452 | ProSiteProfiles | WRKY domain profile. | 323 | 388 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | SUPERFAMILY | WRKY DNA-binding domain | 171 | 233 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | Gene3D | WRKY domain | 313 | 389 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | Gene3D | WRKY domain | 159 | 234 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | Pfam | WRKY DNA -binding domain | 175 | 231 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | Pfam | WRKY DNA -binding domain | 329 | 386 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 80 | 142 | - | - | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 223 | 307 | - | - | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 16 | 36 | - | - | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 385 | 432 | - | - | |
| Lcy8g1705 | 452 | ProSiteProfiles | WRKY domain profile. | 169 | 233 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | SUPERFAMILY | WRKY DNA-binding domain | 320 | 388 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 286 | 300 | - | - | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 400 | 432 | - | - | |
| Lcy8g1705 | 452 | FunFam | WRKY transcription factor | 164 | 234 | - | - | |
| Lcy8g1705 | 452 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 100 | 215 | IPR044810 | GO:0003700(InterPro) | |
| Lcy8g1705 | 452 | MobiDBLite | consensus disorder prediction | 80 | 180 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0042 | Lcy-Chr11:418245 | Lcy8g1705 | Lcy-Chr8:43605441 | 1.68E-100 | dispersed | |
| Lcy7g0314 | Lcy-Chr7:2684309 | Lcy8g1705 | Lcy-Chr8:43605441 | 1.74E-71 | dispersed | |
| Lcy8g0308 | Lcy-Chr8:9337545 | Lcy8g1705 | Lcy-Chr8:43605441 | 1.60E-22 | dispersed | |
| Lcy8g0779 | Lcy-Chr8:28527740 | Lcy8g1705 | Lcy-Chr8:43605441 | 1.85E-20 | dispersed | |
| Lcy8g1624 | Lcy-Chr8:42827965 | Lcy8g1705 | Lcy-Chr8:43605441 | 4.02E-13 | dispersed | |
| Lcy8g1705 | Lcy-Chr8:43605441 | Lcy9g1888 | Lcy-Chr9:43949389 | 4.01E-11 | dispersed | |
| Lcy8g1705 | Lcy-Chr8:43605441 | Lcy10g2040 | Lcy-Chr10:44502823 | 2.48E-73 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20562 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g1705 | K13424 | - | csv:101205221 | 382.104 |