Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1705 ATGGAGTTTTTCTTCTCTGCTTCTGTTGAAGATCCCACCTACGGCCGCCGGAGACTGCCGGAGCGTACGGCGCCGCCCATGTCTAAGCTCATTTCCACGGAAAATCCGCCATTGTTGCCGGCCCTGTCTCCGCCTCTTTTTTCTCCTTCTTCGTTCTTCACTATCCCTCCTGGGATCAGCCCCACCCAGCTTCTTGATTCCCCTGTTTTTCTTAACCCTTCTAATATTCCGCCATCGGCGACTACCGGAGCAATTTCCGCCGGAGACTTGACCGGAAACAGAAACAATTCCGGCCACCACCAACAGAACATCAAACAAGAACACAACAACTTACCTGACTTCTCATTTTCTCGTACCCATCCCACAAAATCATCCTCAATGTTTCAATCATTTTCAACACAGCAAAACCGGCCATGGAGTTCTCAACCCGAACCCCCCGTCAGTTTCCCGCCGGAAACCACCATCTCCGGCGGCTCCAAACGGGATCACCGCCCGCAATCGCAATCGAGAAACAGAGCATCCGACGACGGGTTTAACTGGAGAAAATACGGCCAAAAACTGGTAAAAGGAAGCGAAAATCCCAGAAGCTATTACAAATGTACACATCCAAATTGCCCTGTGAGAAAGCAAGTCGAAAGATCATTGAATGGTCAAATTACAGAAATCGTTTACAAAAGCAAACACAACCATCCAAAACCAGAGTTCACAAGAAGATCGTCATCTTCTTCTTGTTCTTCTTCATCTTCATGGTTATCGGAAGCTTTGCCTCAAACGATGGCGGCGGAGCCAAAGCATCCGGCGGCCTCTGATTCCATGCCGACGCCGGAGAACTCTTCGATTACGATCGGCGACGATGAATCTGATGAAGCCGATGCAAAAAGATGGAAAAGTGAGAGTGAAAATGAAATGGTGTCGGCGGCGGGAGGGAAGACGGTGAGAGAACAGAGAGTTGTGGTTCAAACGATTAGTAATGTGGATAAATTGGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTTAGGGGAAATCCAAATCCAAGAAGCTACTACAAATGCACGTACGCAGGCTGTGGAGTGAGGAAGCACATAGAGAGAGCATCCCACGATTTAAGGGCAGTCATCACTACCTACGAAGGCAAGCACAACCACGAAATTCCGGCAGCCCGTGGCGGCGGTGGCGGCAGACCGGTACTCAATAATCACGGCAGCAGCAACGACGGTGCATCGAACAACGGCAATGGCGACCGACGACCGAGTTCAGAGATCTCTGGTGGCGATAATGGATTATCAAACATGTTGTGGAGGACCAAAGAAGAGGCAGCCGATGACATTTTCCAGTCGTTATTAGACTGA 1359 49.45 MEFFFSASVEDPTYGRRRLPERTAPPMSKLISTENPPLLPALSPPLFSPSSFFTIPPGISPTQLLDSPVFLNPSNIPPSATTGAISAGDLTGNRNNSGHHQQNIKQEHNNLPDFSFSRTHPTKSSSMFQSFSTQQNRPWSSQPEPPVSFPPETTISGGSKRDHRPQSQSRNRASDDGFNWRKYGQKLVKGSENPRSYYKCTHPNCPVRKQVERSLNGQITEIVYKSKHNHPKPEFTRRSSSSSCSSSSSWLSEALPQTMAAEPKHPAASDSMPTPENSSITIGDDESDEADAKRWKSESENEMVSAAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVRGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGGGGRPVLNNHGSSNDGASNNGNGDRRPSSEISGGDNGLSNMLWRTKEEAADDIFQSLLD 452
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 43605441 43609663 + Maker00001358 Lcy8g1705 640597
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1705 452 SMART WRKY_cls 174 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 SMART WRKY_cls 328 387 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 MobiDBLite consensus disorder prediction 157 179 - -
Lcy8g1705 452 FunFam WRKY transcription factor 57 314 388 - -
Lcy8g1705 452 MobiDBLite consensus disorder prediction 236 255 - -
Lcy8g1705 452 ProSiteProfiles WRKY domain profile. 323 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 SUPERFAMILY WRKY DNA-binding domain 171 233 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 Gene3D WRKY domain 313 389 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 Gene3D WRKY domain 159 234 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 MobiDBLite consensus disorder prediction 80 142 - -
Lcy8g1705 452 MobiDBLite consensus disorder prediction 223 307 - -
Lcy8g1705 452 MobiDBLite consensus disorder prediction 16 36 - -
Lcy8g1705 452 MobiDBLite consensus disorder prediction 385 432 - -
Lcy8g1705 452 ProSiteProfiles WRKY domain profile. 169 233 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1705 452 MobiDBLite consensus disorder prediction 286 300 - -
Lcy8g1705 452 MobiDBLite consensus disorder prediction 400 432 - -
Lcy8g1705 452 FunFam WRKY transcription factor 164 234 - -
Lcy8g1705 452 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 100 215 IPR044810 GO:0003700(InterPro)
Lcy8g1705 452 MobiDBLite consensus disorder prediction 80 180 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0042 Lcy-Chr11:418245 Lcy8g1705 Lcy-Chr8:43605441 1.68E-100 dispersed
Lcy7g0314 Lcy-Chr7:2684309 Lcy8g1705 Lcy-Chr8:43605441 1.74E-71 dispersed
Lcy8g0308 Lcy-Chr8:9337545 Lcy8g1705 Lcy-Chr8:43605441 1.60E-22 dispersed
Lcy8g0779 Lcy-Chr8:28527740 Lcy8g1705 Lcy-Chr8:43605441 1.85E-20 dispersed
Lcy8g1624 Lcy-Chr8:42827965 Lcy8g1705 Lcy-Chr8:43605441 4.02E-13 dispersed
Lcy8g1705 Lcy-Chr8:43605441 Lcy9g1888 Lcy-Chr9:43949389 4.01E-11 dispersed
Lcy8g1705 Lcy-Chr8:43605441 Lcy10g2040 Lcy-Chr10:44502823 2.48E-73 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20562 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1705 K13424 - csv:101205221 382.104