Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1714 ATGGCTACCGAGGCGACTGAAGCCACGACTAAGTTTCAGAATCCGGATTTTCGCCCGGTTCCGTCGCCTCCCGATTTTCATCCCGAGATTGTTGTCTCAGCCCATGATGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCAGGGTCTGTTGAGCATATGGCTATGTTTCCGGTTGATACCGTCAAGACTCATATGCAAGCCCTTGGTTCTTGTCCAATTAAATCTGTTGGTGTTCGACAAGCCCTTCGGTCGATTTTGAAGTCAGAGGGACCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGTCTCGGAGCTGGACCTGCACATGCTGTGTATTTTACGGTTTACGAGAATTGTAAGAAGTTTTTCTCTGGTGGGGATCCTAATAATTCAATTGCCCACGCGGCATCTGGGGTCTGTGCAACGGTGGCGAGTGACGCTGTTTTTACACCCATGGATATGGTTAAGCAGAGGTTGCAGCTTAGTAATAGTCCTTACAAGGGAGTGTTGGATTGTGTCAAAAGGGTCCTTAGAGACGAGGGTTCTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCCACATATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGCAAATGATGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCACTTGTTTCAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGTTCACATTTGTGAATGCACAGGGTGTATGTGGATGCGATAGATTCAAAAGTGGGTCGATCAGGGATGTCTTTCGGACGATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCTGCAGCAGCTATTTGCTGGTCGACATATGAAGCGTTAAAATCCTTCTTCCAAGACCTCAACGGCAGCAGCGACAACGTGACCTGA 1014 47.63 MATEATEATTKFQNPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSIAHAASGVCATVASDAVFTPMDMVKQRLQLSNSPYKGVLDCVKRVLRDEGSKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESANDEQWIVHATAGAAAGASAALVSTPLDVVKTQLQCQFTFVNAQGVCGCDRFKSGSIRDVFRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFQDLNGSSDNVT 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43675023 43678551 - Maker00000424 Lcy8g1714 640606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1714 337 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Lcy8g1714 337 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Lcy8g1714 337 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Lcy8g1714 337 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Lcy8g1714 337 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
Lcy8g1714 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Lcy8g1714 337 Gene3D Mitochondrial carrier domain 132 337 IPR023395 -
Lcy8g1714 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Lcy8g1714 337 FunFam Mitochondrial RNA-splicing protein MRS3 167 337 - -
Lcy8g1714 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Lcy8g1714 337 Pfam Mitochondrial carrier protein 38 128 IPR018108 -
Lcy8g1714 337 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
Lcy8g1714 337 Pfam Mitochondrial carrier protein 228 328 IPR018108 -
Lcy8g1714 337 PANTHER MITOFERRIN-1-RELATED 33 328 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Lcy8g1714 337 SUPERFAMILY Mitochondrial carrier 36 321 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1585 Lcy-Chr1:15900007 Lcy8g1714 Lcy-Chr8:43675023 3.45E-159 dispersed
Lcy8g1714 Lcy-Chr8:43675023 Lcy3g2112 Lcy-Chr3:48108678 6.27E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1714 K15113 - csv:101215924 626.32