Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1716 ATGGGAGCTGGTTCATCGCCATGCGCGTCCTGCAAATTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTACCAATTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGCGCGAGAATGCGAGATCCAGTCTACGGCTGCGTTGGGACAATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAGGCGCAGGCTGAGATACTAAGCTTTCAGATGCGGCAACAAGCAGCTCCGACGACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCAGTTTTTTTCTCACATCCTGCTGATTCTTCTAATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTGTGGACCTAA 483 47.83 MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPIDKRADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMRQQAAPTTFPTMEMDLYDQDPVFFSHPADSSNSINSFQEVEDYCSLWT 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43689938 43690925 + Maker00000245 Lcy8g1716 640608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1716 160 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lcy8g1716 160 Coils Coil 86 113 - -
Lcy8g1716 160 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lcy8g1716 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1638 Lcy-Chr8:42979317 Lcy8g1716 Lcy-Chr8:43689938 2.31E-51 dispersed
Lcy8g1716 Lcy-Chr8:43689938 Lcy9g0581 Lcy-Chr9:18811423 7.49E-40 dispersed
Lcy7g0794 Lcy-Chr7:7686872 Lcy8g1716 Lcy-Chr8:43689938 1.56E-37 transposed
Lcy7g1019 Lcy-Chr7:10781412 Lcy8g1716 Lcy-Chr8:43689938 1.31E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20563 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1716 - - - 0.0