Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1738 ATGGACGGTTGCAATAGAAATTTGGGGTTTTGTATCTCTGTTTTGCTCGAATTTTCGGCGACAGATGACCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGACGTGATATTGATGAGGCAAGTTTGTGGTATGGGAGGATTTTTGGTTCAAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTGTCTTATATCGTTCACAGTGGTCGTGTCGATGTTAATCGGGCTTGTGGTTCGGATGGTGCAACGGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCAGATCATGTTGTCAAACTCTTGCTTGATGCTTCTGCTGATGTGAACGCTGTTGATGCAAACGGTTACCGGCCTGGGGACTTTATTGCTCCTGATTTTACTTTAGCCTCCTCCTATTCGAGGAAAAAGGCACTACAACAATTGCTAAGTGGCCGTGGTAACAACGAAGAAGCTCTTGGTTCATCTGAGGCGATATTTTATGAGAGAGAAACGCAGGAGCCACGGGAGCTTTCAACGCCTCGGGTTTCAAGAGATGGGACGGAGAAGAAAGAGTATCCAGTTGATCTATCACTTCCAGACATCAAGAATGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACGGAGTGTCCATTTGTTCACCCTGGGGAAAATGCGAGGAGGCGGGATCCGAGGAAATACCATTACAGCTGCGTCCCATGTCCCGAATTCAGAAAGGGCACATGTAGACAGGGGGATGCCTGTGAGTATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGATGAAACTGGATGCACCAGAAAGGTCTGTTTCTTTGCTCACAAACCGGAAGAGCTCCGCCCCTTGTATGCTTCAACCGGTTCTGCTGTTCTGTCTCCAAGATCAATCTGTGGTTCTTCGCTAGACATCGCGTCAATCAGCCCGCTCACACTTGGTTCTCCTTCAGCTCTGATACCTCCTTCAACAACTCCGCCCGTGACTCCTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATGTTGCGCCTCCAACTTTGCAGCTTCCAGGTAGCAGGTTGAAGGCTGCTTTGAGCGCAAGAGACATAGATTTAGATGTCGAGTTACTTGGTCTCGAAAGCCAGCGCCGTAGACAGCAACAGTTAATGGATGAGATATCCTGTCTGTCTTCCCCTTCCAGATGGAATAATGGCTTGTCAACCGCTGCATCTTTTCCATCCCCAAGGAGTAGAAATGGAGAATTGAATGGGCTTGGAGGCATGAAGCCTACTAACCTCGACGACTTTTTCGGGTCCGTAGATCCTGCAATTTTGCCTCAATTACAAGGACTTTCACTGGATTCCATGGGGTCTCAAGTACAATCCCCTTGCGGGATTCAGATGCGCCAAAGCCTGAATCAGTCTTTCCTCTCGAGCTATGCCAACAGCATTGCATCCCCTACATCAAGGGCGTCTCAACCATTTGGTGTCGACTCGTCTATGTCTGCTGCAGCAAGCGTTCTGAGTTCCAGGGCTGCTGCCTTCGCCAAGCGAAGCCAGAGCTTTATCGAACGTAGTATGGTGAACCGTCATACTGGATTTTCACCTCCAGCTTCATCTGCAACTGCTGTGCCTTTGAACCTGTCTGATTGGGGTTCACCGGATGGGAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGCTTCGAAGCAGTTCTCTAGCAACATCCACAATGCACGCTGCGACTGCCGAGCCAGACGTGTCCTGGGTTCAGTCCCTGGTGAAGGATGCTCCGACCGAGAACTCCGTGCAGTTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCGAAGAAAATGTACAGGGAACAGGAGCAGTTGGTCGCTTAA 2043 48.51 MDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGRDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVSDHVVKLLLDASADVNAVDANGYRPGDFIAPDFTLASSYSRKKALQQLLSGRGNNEEALGSSEAIFYERETQEPRELSTPRVSRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSTTPPVTPGVSSPMGGTMWQTQCNVAPPTLQLPGSRLKAALSARDIDLDVELLGLESQRRRQQQLMDEISCLSSPSRWNNGLSTAASFPSPRSRNGELNGLGGMKPTNLDDFFGSVDPAILPQLQGLSLDSMGSQVQSPCGIQMRQSLNQSFLSSYANSIASPTSRASQPFGVDSSMSAAASVLSSRAAAFAKRSQSFIERSMVNRHTGFSPPASSATAVPLNLSDWGSPDGKLDWGIRGEELNKLRKSASFGLRSSSLATSTMHAATAEPDVSWVQSLVKDAPTENSVQLSMDEQQQQQLCHLDNGDSKKMYREQEQLVA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43860671 43862713 - Maker00000874 Lcy8g1738 640630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1738 680 MobiDBLite consensus disorder prediction 441 460 - -
Lcy8g1738 680 ProSiteProfiles Zinc finger C3H1-type profile. 262 284 IPR000571 GO:0046872(InterPro)
Lcy8g1738 680 Gene3D - 258 320 - -
Lcy8g1738 680 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lcy8g1738 680 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Lcy8g1738 680 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Lcy8g1738 680 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 282 IPR000571 GO:0046872(InterPro)
Lcy8g1738 680 Gene3D - 22 158 IPR036770 -
Lcy8g1738 680 SMART c3hfinal6 257 283 IPR000571 GO:0046872(InterPro)
Lcy8g1738 680 SMART c3hfinal6 292 315 IPR000571 GO:0046872(InterPro)
Lcy8g1738 680 PANTHER UNKEMPT FAMILY MEMBER 54 642 IPR045234 -
Lcy8g1738 680 FunFam Zinc finger CCCH domain-containing protein 66 215 283 - -
Lcy8g1738 680 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Lcy8g1738 680 SUPERFAMILY Ankyrin repeat 54 156 IPR036770 -
Lcy8g1738 680 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1738 Lcy-Chr8:43860671 Lcy9g1994 Lcy-Chr9:44798174 3.62E-54 dispersed
Lcy12g0450 Lcy-Chr12:5462034 Lcy8g1738 Lcy-Chr8:43860671 7.42E-140 transposed
Lcy5g0682 Lcy-Chr5:8751751 Lcy8g1738 Lcy-Chr8:43860671 7.16E-160 transposed
Lcy7g0994 Lcy-Chr7:10389301 Lcy8g1738 Lcy-Chr8:43860671 1.90E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20566 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1738 - - - 0.0