Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1760 ATGCCGGCCATTACTCGAGGAAATCACTGTAAGATCCGAGTGACTGATGGATCTGTAATGGAGTCCACTCCTCCGAAGCGGAAACTTCAACAAAGCACTGTCTCTGAGCCGGTGAATAAGTTGGCTCGACGGCGCCTCCTCAATTCGAGCCCAAATAGTCCTCCACATTGCGAAGGAAAAACGTTTAATGATGACTTTCCTAAAACAGCAAAGGAAGTGTTGCACGTTTCGGCAGCCCCAACTACAATCCTTTGCCGTGACGATGAACGAAGTAGAATATTCAATTTCTGCAAGGCTTGTTTGGAGCAAGAAAAAGCTGGCAGTTTGTATGTCTGTGGCTGTCCAGGAACAGGCAAATCTTTGTCTATGGACAAAGTGAAAGACCAGTTGGCTGCTTGGGTAAAGGAGTCAGGTCTTCAGCTGCCAGACACTTTGTCCATAAACTGCGCTTCCTTGGCAAATACGTCTGATATATTCATTAAGATGATGGGTGAAGCACAACCACATAAGAAAAAGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTATACTCCCAAAAGGCAGAGTCATCGGGCAAGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAGCTTTTCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATCGACTTAGCAGATCGCTTTCTTCCAAAACTTCGGGCACTGAATTGCAAACCTCAGGTTGTAACGTACCGGGCTTATTCCAAGGATCAGATCCTCAAGATTCTTCAACAAAGGTTAATGGCATTGCCTTCCGTTGTCTTTCAACCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTGTCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGTAATGCCATTGAATTGTTAGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAACGACGGGAGTGACGCTTCAACACCTGAGTTTGTCAAAAAACAAGAGGCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCTTTATCCAAGGCTTTTAAATCACCAGCCGTGGAAACCATACAGTCTCTTCCTCAACATCAACAGATTATTTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGGAAGAAGGATACAACCATAGGAGAGCTTAACAAATCATATGTAGATATCTGCAAATCAACACACATTCCTCCGGTGGGAACTTTCGAACTTTCAAATATGTGCGCAGTGCTAAGCGATCAGGGGCTTCTCGTACTTGGCAAGTCTCGAGTCGATAAAACGAGGCGAGTGTTGTTGAAAGTTGATGAAGCCGATGTCGTGTTTGCATTACAGATATACGCTTCTTTGTTTGAATCAGGGAATACGCTTCTTTCGAAACTGCCTACAGTAAATTAG 1452 43.39 MPAITRGNHCKIRVTDGSVMESTPPKRKLQQSTVSEPVNKLARRRLLNSSPNSPPHCEGKTFNDDFPKTAKEVLHVSAAPTTILCRDDERSRIFNFCKACLEQEKAGSLYVCGCPGTGKSLSMDKVKDQLAAWVKESGLQLPDTLSINCASLANTSDIFIKMMGEAQPHKKKNGSLTPLQHLQRLYSQKAESSGKKMMLIIADELDYLITKDKAVLHDLFMLTAFPFSRCILIGIANAIDLADRFLPKLRALNCKPQVVTYRAYSKDQILKILQQRLMALPSVVFQPQALELCARKVAAVSGDMRKALCVCSNAIELLEVELKASSKELNHNDGSDASTPEFVKKQEAQIVRLDHMAVALSKAFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYVDICKSTHIPPVGTFELSNMCAVLSDQGLLVLGKSRVDKTRRVLLKVDEADVVFALQIYASLFESGNTLLSKLPTVN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44086543 44091457 - Maker00000761 Lcy8g1760 640652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1760 483 CDD Cdc6_C 376 458 IPR015163 -
Lcy8g1760 483 SMART Cdc6_C_2 383 462 IPR015163 -
Lcy8g1760 483 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 24 463 IPR050311 GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER)
Lcy8g1760 483 SUPERFAMILY Winged helix DNA-binding domain 369 463 IPR036390 -
Lcy8g1760 483 Pfam AAA domain 105 227 IPR049945 GO:0016887(InterPro)
Lcy8g1760 483 Gene3D - 257 352 - -
Lcy8g1760 483 FunFam Cell division control protein 64 252 - -
Lcy8g1760 483 Pfam Cdc6/ORC-like, ATPase lid domain 264 321 IPR054425 -
Lcy8g1760 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 321 IPR027417 -
Lcy8g1760 483 Gene3D - 368 463 IPR036388 -
Lcy8g1760 483 Gene3D - 64 256 IPR027417 -
Lcy8g1760 483 PIRSF Cdc6 5 471 IPR016314 GO:0006270(InterPro)|GO:0051301(InterPro)
Lcy8g1760 483 Pfam CDC6, C terminal winged helix domain 370 461 IPR015163 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0711 Lcy-Chr13:10315239 Lcy8g1760 Lcy-Chr8:44086543 1.99E-235 dispersed
Lcy6g1462 Lcy-Chr6:22415358 Lcy8g1760 Lcy-Chr8:44086543 5.54E-32 dispersed
Lcy8g1760 Lcy-Chr8:44086543 Lcy13g0853 Lcy-Chr13:14800366 1.94E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1760 K02213 - csv:101205741 691.034