Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1760 | ATGCCGGCCATTACTCGAGGAAATCACTGTAAGATCCGAGTGACTGATGGATCTGTAATGGAGTCCACTCCTCCGAAGCGGAAACTTCAACAAAGCACTGTCTCTGAGCCGGTGAATAAGTTGGCTCGACGGCGCCTCCTCAATTCGAGCCCAAATAGTCCTCCACATTGCGAAGGAAAAACGTTTAATGATGACTTTCCTAAAACAGCAAAGGAAGTGTTGCACGTTTCGGCAGCCCCAACTACAATCCTTTGCCGTGACGATGAACGAAGTAGAATATTCAATTTCTGCAAGGCTTGTTTGGAGCAAGAAAAAGCTGGCAGTTTGTATGTCTGTGGCTGTCCAGGAACAGGCAAATCTTTGTCTATGGACAAAGTGAAAGACCAGTTGGCTGCTTGGGTAAAGGAGTCAGGTCTTCAGCTGCCAGACACTTTGTCCATAAACTGCGCTTCCTTGGCAAATACGTCTGATATATTCATTAAGATGATGGGTGAAGCACAACCACATAAGAAAAAGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTATACTCCCAAAAGGCAGAGTCATCGGGCAAGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAGCTTTTCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATCGACTTAGCAGATCGCTTTCTTCCAAAACTTCGGGCACTGAATTGCAAACCTCAGGTTGTAACGTACCGGGCTTATTCCAAGGATCAGATCCTCAAGATTCTTCAACAAAGGTTAATGGCATTGCCTTCCGTTGTCTTTCAACCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTGTCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGTAATGCCATTGAATTGTTAGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAACGACGGGAGTGACGCTTCAACACCTGAGTTTGTCAAAAAACAAGAGGCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCTTTATCCAAGGCTTTTAAATCACCAGCCGTGGAAACCATACAGTCTCTTCCTCAACATCAACAGATTATTTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGGAAGAAGGATACAACCATAGGAGAGCTTAACAAATCATATGTAGATATCTGCAAATCAACACACATTCCTCCGGTGGGAACTTTCGAACTTTCAAATATGTGCGCAGTGCTAAGCGATCAGGGGCTTCTCGTACTTGGCAAGTCTCGAGTCGATAAAACGAGGCGAGTGTTGTTGAAAGTTGATGAAGCCGATGTCGTGTTTGCATTACAGATATACGCTTCTTTGTTTGAATCAGGGAATACGCTTCTTTCGAAACTGCCTACAGTAAATTAG | 1452 | 43.39 | MPAITRGNHCKIRVTDGSVMESTPPKRKLQQSTVSEPVNKLARRRLLNSSPNSPPHCEGKTFNDDFPKTAKEVLHVSAAPTTILCRDDERSRIFNFCKACLEQEKAGSLYVCGCPGTGKSLSMDKVKDQLAAWVKESGLQLPDTLSINCASLANTSDIFIKMMGEAQPHKKKNGSLTPLQHLQRLYSQKAESSGKKMMLIIADELDYLITKDKAVLHDLFMLTAFPFSRCILIGIANAIDLADRFLPKLRALNCKPQVVTYRAYSKDQILKILQQRLMALPSVVFQPQALELCARKVAAVSGDMRKALCVCSNAIELLEVELKASSKELNHNDGSDASTPEFVKKQEAQIVRLDHMAVALSKAFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYVDICKSTHIPPVGTFELSNMCAVLSDQGLLVLGKSRVDKTRRVLLKVDEADVVFALQIYASLFESGNTLLSKLPTVN | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 44086543 | 44091457 | - | Maker00000761 | Lcy8g1760 | 640652 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1760 | 483 | CDD | Cdc6_C | 376 | 458 | IPR015163 | - | |
Lcy8g1760 | 483 | SMART | Cdc6_C_2 | 383 | 462 | IPR015163 | - | |
Lcy8g1760 | 483 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 24 | 463 | IPR050311 | GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER) | |
Lcy8g1760 | 483 | SUPERFAMILY | Winged helix DNA-binding domain | 369 | 463 | IPR036390 | - | |
Lcy8g1760 | 483 | Pfam | AAA domain | 105 | 227 | IPR049945 | GO:0016887(InterPro) | |
Lcy8g1760 | 483 | Gene3D | - | 257 | 352 | - | - | |
Lcy8g1760 | 483 | FunFam | Cell division control protein | 64 | 252 | - | - | |
Lcy8g1760 | 483 | Pfam | Cdc6/ORC-like, ATPase lid domain | 264 | 321 | IPR054425 | - | |
Lcy8g1760 | 483 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 72 | 321 | IPR027417 | - | |
Lcy8g1760 | 483 | Gene3D | - | 368 | 463 | IPR036388 | - | |
Lcy8g1760 | 483 | Gene3D | - | 64 | 256 | IPR027417 | - | |
Lcy8g1760 | 483 | PIRSF | Cdc6 | 5 | 471 | IPR016314 | GO:0006270(InterPro)|GO:0051301(InterPro) | |
Lcy8g1760 | 483 | Pfam | CDC6, C terminal winged helix domain | 370 | 461 | IPR015163 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0711 | Lcy-Chr13:10315239 | Lcy8g1760 | Lcy-Chr8:44086543 | 1.99E-235 | dispersed | |
Lcy6g1462 | Lcy-Chr6:22415358 | Lcy8g1760 | Lcy-Chr8:44086543 | 5.54E-32 | dispersed | |
Lcy8g1760 | Lcy-Chr8:44086543 | Lcy13g0853 | Lcy-Chr13:14800366 | 1.94E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1760 | K02213 | - | csv:101205741 | 691.034 |