Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1763 ATGCCGCCGCCCACTGCCGCCTCCTTCTCCAACAAATTCCTCGCCCTTTTACTCCTCATCGTCCACGTCGGCTGCTTCCTTCTTACCTCCGCCGCCGACCACCGCCGCCGCCACCACCGCCCCTCGCCGCCGAAGAATCGCAACGAGTCCTCACCGACTCCGTCGTGTCTCAAGCCACACAAAGCCCTAACGTCTTCGTTTTCGTTTCTCAAACGAATCTTCTCTTCCAAAACGTGCAAAATGGCAATCGAAACGACTCGGCCGTCGACTCCGGCTCGATCGTCGCAGCACTCGATCGTCACGCTGATCCAGCCGGAGGTTTCTCTGCCGGCGGAGACTCCGAGCGCTAAGAATCCTCCCGATTCCGCTGGAACGCCGCAGGATTCCGACATCACGACGGCGGAGATCAACCAATTCTTCCCTCTCCGCAACGATATCTTCCCCTGCACCGCCTGCGGCGAGATTTTCCCAAAGCCTCAGTTGCTCGAACAGCATCAATCGGCGAAACACGCAGTGTCGGAGCTCGCCGATTCGGATTCCGGCAAGAACATCGTTCGGATCATCTTCGAAACTGGATGGACCAGTAGAGAAAAAAGCCCTAGAATCCTTCGAATCTTGAAAATCCACAACAGCCAAAAGATTCTCTCCAGATTCGAGGAGTACAGAGAGTCGGTGAAGGCCAAAGCGGCGCGAAACGGCGCCGTGAAGAGGCGGGACGAGCGGTGCATAGCCGACGGGAACGAGCTTCTGAGATTTCACTGTTCGACGTTCTTATGCGATTTAGGGCAAAACGGTAATTCCAGCATCTGCGGGCAGCAATTTTGTAGTATTTGTGGGATCATAAAATCGGGATTCTCACACAAGTTGGACGGAATTTCTACGCTATCGAGTAGCTGGAGGGCACACGTGGCAATCCCTGACGACATCGAAGAGGAGTTCAAGTTCATGAACGTGAAGCGGGCGATTTTGGTCTGTCGGGTCATGGCGGGCCGGGTTGGGTCCGACAACGAGGAACCGGAGAAGGACGGCGGCGGGTTTGACTCCGTCGTCGGCCGGAGTGGGAGTGGCGCCAGGACGACGGTGGATGAAGAAGAGCTGTTGGTTTTCAATCCTAGGGCTGTGCTCCCCTGCTTCGCGATTGTGTACGAAATCTGA 1155 56.1 MPPPTAASFSNKFLALLLLIVHVGCFLLTSAADHRRRHHRPSPPKNRNESSPTPSCLKPHKALTSSFSFLKRIFSSKTCKMAIETTRPSTPARSSQHSIVTLIQPEVSLPAETPSAKNPPDSAGTPQDSDITTAEINQFFPLRNDIFPCTACGEIFPKPQLLEQHQSAKHAVSELADSDSGKNIVRIIFETGWTSREKSPRILRILKIHNSQKILSRFEEYRESVKAKAARNGAVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPDDIEEEFKFMNVKRAILVCRVMAGRVGSDNEEPEKDGGGFDSVVGRSGSGARTTVDEEELLVFNPRAVLPCFAIVYEI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44109953 44111107 - Maker00000409 Lcy8g1763 640655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1763 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 175 IPR013087 -
Lcy8g1763 384 MobiDBLite consensus disorder prediction 33 59 - -
Lcy8g1763 384 MobiDBLite consensus disorder prediction 334 356 - -
Lcy8g1763 384 MobiDBLite consensus disorder prediction 110 130 - -
Lcy8g1763 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 68 382 - -
Lcy8g1763 384 Gene3D - 171 383 - -
Lcy8g1763 384 SUPERFAMILY ADP-ribosylation 173 383 - -
Lcy8g1763 384 ProSitePatterns Zinc finger C2H2 type domain signature. 149 170 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1806 Lcy-Chr12:39148952 Lcy8g1763 Lcy-Chr8:44109953 8.10E-33 dispersed
Lcy8g1763 Lcy-Chr8:44109953 Lcy9g2259 Lcy-Chr9:47104776 3.34E-60 dispersed
Lcy8g1763 Lcy-Chr8:44109953 Lcy6g1271 Lcy-Chr6:15869757 1.53E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20567 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1763 - - - 0.0