Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1797 ATGGATCCAAACCTTAACGGTTTCCCTGATCGTGGAGTTGATTATAACTTCGATTATCAAACCCCTTTAACCCAATTACATGATCTCCCCAATAGTTCGATCGATGGGTTTCAAGTAATTGATCGGACTTCTTCTTTACCCACTTCATATCTATACTCTGAACTCGAAAACAGTTTTGAATTCAACAAGCCATCTCCAAATCTTGTTCCCTTATTCCAGAATTCCCTTTTCCCCTACGAACCAGAACCCAACATTTTTTCTTCGCCAGAAGGAGAGTCGTTTGCTGGGGCAGTAGGGTTGAACTCGGATGGAGGTGCTCTCGGGGTGGCTTCGGGTTTAAGCTTAAGCCCTGGTGGCGACTCTTCCTCGGACGAGAGTGACTTCAAGGAAACTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAGGAGATGCCCTGCATGTTTTATGATCCTTTGGGACTTAAAGTTACTGAGAAATCTTTCTATGATGCTCTTGGTAAGAACTACCCTCCTTCGCCTAACCAACCTCCCCTGGATTGTGAGAGCTCTGAAGATGGTAATCGTGGAAGCGAAGGTGGTCGTGCCAGTAGTAATGTTAGTGTTGGCGACAGCAATTCGCCTGACCCGCAATGGGTTGTTGATCCTGGAGAACATAAGTCCTCTATACTTCCAAGACCTTTTCCCAGTAACTCATACCAGTCGAATTTCGAGCTTAGTTCGAGTAGTCAAAGCAGCCTGACTCTTAATAGTCATGAGCTGGTCACTGAGCTGTTGGCTCAGAATATCTTTAGTGATAGCACATCCATCTTGCAATATCAAAAAGGGTTGGAGGAAGCAAGTAAGTTTCTTCCGGGAGGTAATCAGCTGAATATTGATCTTGGTAGCGGCATATTGACAGGAGTAGCTTCTACAACAGAGAAGGATAAAAGGGAGAATTCACCGAATGGATTGAAGGGAAGGAAGAATCGAGAACGTGAAGATGTAGACTTGGATTTGGAAGACGGGAGGAGAAACAAGCATGCAACCATCTATGGGAATGAGAATGAGGAAGAGGAAGAATTATCTGAACTGTTCGATAAGGTTTTACTTTATGATTGTGGAAATGAGACCTCTGCAAATGGTGGGTGTGAGAAAGTGGAGTATAACGGACAACTTCAAGGATCTGTTGTTGGGAAAGCTCGAGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGTGCACAAGCTGTGTCTTCTGATGACCGTAGGATTGCTCATGAACTACTTAAGCAGATTAGGCAACATTCTACAACCATTGGGGATGGTTCCCAAAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGCATGGTTGGCACTGGCACAGGCAGCAGAATCTACTATGAATCACTATCTCAAAGCAATATTTCTGCCGCTGATATGTTGAAAGCTTACCAAGCTCACCTTTCATCCTGCCCTTTTAAGAAACTGTCGCTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAAGGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGCTATGGTTTCCTGTGGCCAATGTTAATTCAGTTTCTGGCACAACTACCTGATGGTCCACCCAAGCTACGCATTACTGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCACAAAAGATTGATGAGTCAGGTCGTCGTTTGGCAAAATACTGTGAGCGCTTTAAAGTTCCTTTTCAATATCAAGCCATAGCATCACATGACTGGGAAACTATCAAAGTTGAGGACTTCAAGCTTGAGAGCAGTGATGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGATGAAACTGTCGAAGAAAGTAGTCCAAGGGATGTTGTTCTGCGTTTAGTAAGGAAGATGAATCCAAACATCTTTGTCCATTCTGTGGTTACTGGATCCTACAATGCCCCCTTCTTCATAACACGATTCAGGGAAGCACTCTTCCACTTCTCTGCATTATACGATGCTCTAGATGTTACTTTACCTCGTGAAAGTGACGAGAGGATGATGATAGAGAGAGAGTTTCTTGGACGCCAAATTATGAATGTAGTAGCATGTGAGGGTGTTCAGAGGGTTGAGAGGCCTGAAACCTATAAGCAGTGGCAGGTTCGGTGTATGAGAGCTGGTTTCAAGCAGCTCCCTTTGGACAAGGAGATTATGAACAAGTTCAGGAACAAGTTAAAATCCCATTACCACAAAGATTTTGTGCTCGATGAAGATGACGGTTGGATGCTTCAAGGATGGAAAGGCCGGATTGTCTATGGTTCTTGTTGTTGGGTGCCAGCATAG 2367 43.26 MDPNLNGFPDRGVDYNFDYQTPLTQLHDLPNSSIDGFQVIDRTSSLPTSYLYSELENSFEFNKPSPNLVPLFQNSLFPYEPEPNIFSSPEGESFAGAVGLNSDGGALGVASGLSLSPGGDSSSDESDFKETVLKYISQMLMEENLEEMPCMFYDPLGLKVTEKSFYDALGKNYPPSPNQPPLDCESSEDGNRGSEGGRASSNVSVGDSNSPDPQWVVDPGEHKSSILPRPFPSNSYQSNFELSSSSQSSLTLNSHELVTELLAQNIFSDSTSILQYQKGLEEASKFLPGGNQLNIDLGSGILTGVASTTEKDKRENSPNGLKGRKNREREDVDLDLEDGRRNKHATIYGNENEEEEELSELFDKVLLYDCGNETSANGGCEKVEYNGQLQGSVVGKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAHELLKQIRQHSTTIGDGSQRMAHFFANALEARMVGTGTGSRIYYESLSQSNISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAEKAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPKLRITGIDHPLPGFRPAQKIDESGRRLAKYCERFKVPFQYQAIASHDWETIKVEDFKLESSDVLVVNCFYRFNNLLDETVEESSPRDVVLRLVRKMNPNIFVHSVVTGSYNAPFFITRFREALFHFSALYDALDVTLPRESDERMMIEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRNKLKSHYHKDFVLDEDDGWMLQGWKGRIVYGSCCWVPA 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44374285 44376651 - Maker00001102 Lcy8g1797 640689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1797 788 ProSiteProfiles GRAS family profile. 402 786 IPR005202 -
Lcy8g1797 788 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 396 785 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy8g1797 788 MobiDBLite consensus disorder prediction 306 333 - -
Lcy8g1797 788 MobiDBLite consensus disorder prediction 193 211 - -
Lcy8g1797 788 Pfam GRAS domain family 411 785 IPR005202 -
Lcy8g1797 788 MobiDBLite consensus disorder prediction 170 230 - -
Lcy8g1797 788 MobiDBLite consensus disorder prediction 308 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1707 Lcy-Chr6:32744414 Lcy8g1797 Lcy-Chr8:44374285 2.24E-58 dispersed
Lcy8g1797 Lcy-Chr8:44374285 Lcy9g0957 Lcy-Chr9:32038209 1.79E-58 dispersed
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1797 Lcy-Chr8:44374285 1.83E-175 wgd
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1797 Lcy-Chr8:44374285 1.22E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20569 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1797 K27753 - csv:101203568 1120.53