Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1801 ATGGCCACCGTGTTTTCTCTCTGCGTTATTTCTCTACTATCAGTTTTCTTAATCGTCGAAGCTAGAATCCCCGGAGTTTACTCCGGCAGCGCCTGGCAGAACGCCCACGCCACCTTCTACGGCGGCTCTGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTATGGAAATCTTTACAGCCAAGGGTATGGAGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTCGAGATTAAGTGTGCTAATGACCCGCGGTGGTGCCATTCCGGTAGCCCGTCGATTCTGATCACTGCGACCAATTTCTGCCCGCCGAACTATGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGGTCCCACTTCGACCTCGCCATGCCTATGTTCCTTAAAATTGCCGAGTACCGCGCCGGTATCGTCCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTCACGATCAACGGCTTCCGATACTTCAATCTGGTTCTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGCGAGCGTGAAAGGATCAAAGACAGGGTGGATGAGCATGACAAGAAACTGGGGGCAAAACTGGCAATCCAATGCCGTATTGGTGGGCCAGGCTCTGTCCTTCAGAGTTACGGGCAGTGACCGACGAACCTCAACGTCTTGGAACATCGTGCCCGCCAATTGGCAGTTCGGCCAGACTTTCACCGGGAAAAACTTCCGTGTTTAA 777 55.73 MATVFSLCVISLLSVFLIVEARIPGVYSGSAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44424220 44426084 + Maker00000768 Lcy8g1801 640693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1801 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lcy8g1801 258 Gene3D - 164 256 IPR036749 -
Lcy8g1801 258 Gene3D - 20 160 IPR036908 -
Lcy8g1801 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lcy8g1801 258 PANTHER EXPANSIN-A15 10 256 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 FunFam Expansin 21 160 - -
Lcy8g1801 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Lcy8g1801 258 SMART dpbb_1 67 154 IPR007112 -
Lcy8g1801 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lcy8g1801 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lcy8g1801 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Lcy8g1801 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Lcy8g1801 258 CDD DPBB_EXPA_N 32 159 - -
Lcy8g1801 258 FunFam Expansin 164 256 - -
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Lcy8g1801 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1719 Lcy-Chr12:37764073 Lcy8g1801 Lcy-Chr8:44424220 9.77E-83 dispersed
Lcy1g1311 Lcy-Chr1:12580749 Lcy8g1801 Lcy-Chr8:44424220 1.32E-110 dispersed
Lcy3g0450 Lcy-Chr3:15686323 Lcy8g1801 Lcy-Chr8:44424220 5.67E-91 dispersed
Lcy3g0452 Lcy-Chr3:15751562 Lcy8g1801 Lcy-Chr8:44424220 7.59E-99 dispersed
Lcy6g2003 Lcy-Chr6:42665910 Lcy8g1801 Lcy-Chr8:44424220 3.19E-94 dispersed
Lcy7g1071 Lcy-Chr7:11465885 Lcy8g1801 Lcy-Chr8:44424220 3.50E-127 dispersed
Lcy10g1106 Lcy-Chr10:33380233 Lcy8g1801 Lcy-Chr8:44424220 2.92E-79 transposed
Lcy4g0428 Lcy-Chr4:5273355 Lcy8g1801 Lcy-Chr8:44424220 3.15E-92 transposed
Lcy1g1434 Lcy-Chr1:13900248 Lcy8g1801 Lcy-Chr8:44424220 1.51E-176 wgd
Lcy11g0175 Lcy-Chr11:1996279 Lcy8g1801 Lcy-Chr8:44424220 2.01E-156 wgd
Lcy7g0893 Lcy-Chr7:8939840 Lcy8g1801 Lcy-Chr8:44424220 2.21E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1801 - - - 0.0