Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1809 ATGGGTAACGGGATAGGGAAGCTCGGCGTTTGCTTCACCGGAATCGACGATGGACGGCGGCGGCCGGATATTTCCGTTCTGCTATCGAATCCACTCGATGAAGGGCTCGGCCACTCGTTCTGCTATGTCCGGCCGGATCCTTTGAGGCTTTCGTCTTCAAAAGTTCATTCGGAAGAAACCACCACTTTCCGATCAATTTCCGGCGCCTCTGTAAGTGCCAATACATCGACGCCTCTTTCTACGGCGCTTGTTGATCTGTATTCGTACAATAGCATTGATCGAGCGGCGGCTTTTGAGAGCTCGACTTCTTTCGCTTCAATCCCTTTGCAGCCGATCCCTAGAAATATGATAAATTCGGGTCCGATTTCGGGGAATTTCAGTGGAGTCCCGTGTTCGGGTCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAGCGAGGGTTTATGTCGGGTCCATTGGATCGGGGGATTTTTTCGGGTCCTCTTGATAATTCTTCATCCACTGAGTTTCAGAGAAGTTTCTCTCATGGAGGAGGGTTTAATTCCAGATCTAGATCGAGAAAAAGCCGGCTAATTCGGATTTTAAGAAGCGCAATTTCGAAGTCGATTTATCGAGGGCAAAATTCCATTGTGGCTCCGATTAAAGCGGTTAAAGAACCCGATTGGATCGTCATGCCCGAGAAGCATAATGAGAATTTGACTGTCAGTAGTTTGAATTTCAGTAGCGAGGGGAGTTTGGAGGACGATGATTCAATGGAGAGCCAAAATCTTCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTGGTTTCTGAAGAACACGGGTGGGTTTTCGTAGGGATTTATGATGGATTCAACGGTCCTGATGCTCCTGATTATCTTTTGTCGAATTTGTACCCCTCTGTTCATAAAGAGCTCAAAGGTTTGTTATGGGACGAAAAGCTCGATTCGGCTGGAGTCGCCGCTCCGGCCACTTCCCCTGTTCGATCTGAGCATCCTTGTTCAGAAACAAGAGATTCTTCTCTGGTTAATGACAGTGATTTGGAGAGGAATCGGGTGAGTGATGCTTGTTCTCAGTGTGTTGAACAAGAGAATCATCCTTGTGCTAGTGGAGATGGGAATTCTGGATCGAATTCGAGGAGACGAAAAGGTAGGAATTCAAGAGGAAAGTTCAGAGGAGCTGCTGAGAAGTGGGAGGATAGTCAGCGGCGGTGGAAGTGCGAATGGGACCGGGAACGGTTAGAACTCGATCGGAGGTTAAAGGAGCAGTTGAATCGATCTGGGTCGCACGGTTCACGGTCGATTAATCATTCAGATGTTTTGAAAGCTCTATCCCAGGCATTGAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTCGTGATGCTTATGAAGGGAGATGATGTTTATGTGATGAATGTTGGTGACAGCCGAGCTGTTTTAGCTCAGAAGGCGGAGCCCGATTATTGGCTCGGGAAGATTCGACAGGACTTGGAGAGGATCAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATGGTGATAGAGCATTCACCTCCGCTAACCTTACTGCTTTTCAGCTTTCCATGGATCACAGTACCAGTGTTGATGAGGTGATTAGAGTGTTCTTTAGAACTGCAAAAGTGCTTTGGGATTTTGATGCATTACTGTTGCTTGATTTAGTTCTTGTTGTTGTATTACAGGAAGTTCAGAGAATAAAAAGTGAACACCCTGATGATGCTGGTGCCGTGATGAATGACCGTGTGAAGGGCTCGTTGAAGGTTACTCGGGCGTTCGGTGCTGGTTTCCTCAAACAGGTTGGTGACCTTTTTAAAATACTATGCCTTGCTCTTATATGGATTGTTCTTTTGAAGCAATTAGCTGCATTGATGGCTTCATACTATATCCAGTGTTTATCTTTCCAGTGCAATGTTGAATGCATAATTGGTCTAGCTTGTTATGATCTGCATTGGATAAATCTGGATTGCAACTGTTCTTATCTCGACCCTGCGTCGTTCCAATTGATTATACTCGTTAGAGTTGTTTTCTACTTCACAAACGAAGAAGCTGTTTCTGAAGTTGAACTTTTCATCACATTGCAACCCGAAGGAGATCCGGCTCAACATCTGGTTGAACTCCTGCTGTTTCGGGCTGCGAAGCGAGCTGGTATGGATTTCCACGAGTTACTCGAAATACCGCAGGGTGACCGGAGGAAGTACCACGACGATGTATCGATCATTGTAATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2343 45.92 MGNGIGKLGVCFTGIDDGRRRPDISVLLSNPLDEGLGHSFCYVRPDPLRLSSSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFSGVPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNSSSTEFQRSFSHGGGFNSRSRSRKSRLIRILRSAISKSIYRGQNSIVAPIKAVKEPDWIVMPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYPSVHKELKGLLWDEKLDSAGVAAPATSPVRSEHPCSETRDSSLVNDSDLERNRVSDACSQCVEQENHPCASGDGNSGSNSRRRKGRNSRGKFRGAAEKWEDSQRRWKCEWDRERLELDRRLKEQLNRSGSHGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPVHDIEALDGDRAFTSANLTAFQLSMDHSTSVDEVIRVFFRTAKVLWDFDALLLLDLVLVVVLQEVQRIKSEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQVGDLFKILCLALIWIVLLKQLAALMASYYIQCLSFQCNVECIIGLACYDLHWINLDCNCSYLDPASFQLIILVRVVFYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44492648 44496549 + Maker00000496 Lcy8g1809 640701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1809 780 Coils Coil 444 464 - -
Lcy8g1809 780 MobiDBLite consensus disorder prediction 335 350 - -
Lcy8g1809 780 Pfam Protein phosphatase 2C 446 506 IPR001932 -
Lcy8g1809 780 CDD PP2Cc 439 771 IPR001932 -
Lcy8g1809 780 SMART PP2C_4 250 769 IPR001932 -
Lcy8g1809 780 MobiDBLite consensus disorder prediction 325 350 - -
Lcy8g1809 780 Gene3D - 226 635 IPR036457 -
Lcy8g1809 780 SUPERFAMILY PP2C-like 263 772 IPR036457 -
Lcy8g1809 780 Gene3D - 701 776 IPR036457 -
Lcy8g1809 780 MobiDBLite consensus disorder prediction 366 380 - -
Lcy8g1809 780 PANTHER PROTEIN PHOSPHATASE 2C 240 771 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy8g1809 780 ProSiteProfiles PPM-type phosphatase domain profile. 249 771 IPR001932 -
Lcy8g1809 780 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2205 Lcy-Chr6:46334184 Lcy8g1809 Lcy-Chr8:44492648 8.96E-103 dispersed
Lcy1g1438 Lcy-Chr1:13958390 Lcy8g1809 Lcy-Chr8:44492648 3.23E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1809 - - - 0.0