Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1811 ATGGCAGATGGGGAGGATATTCAGCCACTAGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCCGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTTGGCATGGGCCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCCAAACGAGGTATATTAACTTTGAAATATCCCATTGAGCATGGTATAGTGAGCAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTGCGAGTGGCTCCTGAAGAGCACCCTGTGCTACTCACTGAAGCACCTCTGAACCCAAAGGCTAATCGTGAAAAGATGACCCAAATCATGTTCGAGACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACGACTGATAACTTGGCTATAGCTCTATCTTCTTTTGTTCGTGAAAAAACTCGATCATGTATAAGCCACCCTGTTCTTATGGAAATGGAAATGTATGGCTATTGTTTCATGACTGATATATGTATTGTTTTGGATTCTGGAGATGGTGTCAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTCCCCCATGCCATTCTTCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGCCCTCATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGAGACGTGAAGGAAAAACTAGCATATATTGCCCTGGACTTTGAGCAAGAACTTGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGCTATGAACTTCCAGATGGGCAGATTATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAGACAACATATAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAAGAAATAACTGCACTAGCCCCTAGCAGCATGAAAATTAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTCTGGCCTCACTGAGCACATTCCAGCAGGTATGTGCATTGTTAGATGCTAATTAA 1209 45.16 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTDNLAIALSSFVREKTRSCISHPVLMEMEMYGYCFMTDICIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVCALLDAN 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44507180 44508798 - Maker00001484 Lcy8g1811 640703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1811 402 Gene3D Actin; Chain A, domain 4 220 311 - -
Lcy8g1811 402 SMART actin_3 7 402 IPR004000 -
Lcy8g1811 402 Gene3D - 10 396 - -
Lcy8g1811 402 SUPERFAMILY Actin-like ATPase domain 190 396 IPR043129 -
Lcy8g1811 402 Gene3D - 140 378 - -
Lcy8g1811 402 PRINTS Actin signature 63 85 IPR004000 -
Lcy8g1811 402 PRINTS Actin signature 142 161 IPR004000 -
Lcy8g1811 402 PRINTS Actin signature 28 37 IPR004000 -
Lcy8g1811 402 PRINTS Actin signature 117 130 IPR004000 -
Lcy8g1811 402 PRINTS Actin signature 51 62 IPR004000 -
Lcy8g1811 402 FunFam Major actin 298 378 - -
Lcy8g1811 402 FunFam Actin, muscle 220 311 - -
Lcy8g1811 402 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy8g1811 402 Pfam Actin 5 396 IPR004000 -
Lcy8g1811 402 CDD NBD_sugar-kinase_HSP70_actin 10 221 - -
Lcy8g1811 402 FunFam Actin, alpha skeletal muscle 3 172 - -
Lcy8g1811 402 PANTHER ACTIN 8 392 IPR004000 GO:0005737(PANTHER)
Lcy8g1811 402 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
Lcy8g1811 402 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0203 Lcy-Chr8:5066839 Lcy8g1811 Lcy-Chr8:44507180 2.67E-245 dispersed
Lcy7g0099 Lcy-Chr7:917576 Lcy8g1811 Lcy-Chr8:44507180 3.82E-64 transposed
Lcy1g1441 Lcy-Chr1:13981352 Lcy8g1811 Lcy-Chr8:44507180 7.84E-247 wgd
Lcy7g0882 Lcy-Chr7:8799316 Lcy8g1811 Lcy-Chr8:44507180 1.19E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1811 K10355 - gmx:100811630 684.871