Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1815 ATGGGGGAGGAGAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAATGATATAGCTTCAATCTCAGATTATAGGTACGCGGTCAAAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGAAGCCGCTGCCGGATGATACCATCAGAGCTCTTGCTTCGTTGAAGGAAGCTCTAGAATCGACCAAGGAGTTGCTTAGAACTGGCAGCGAGGGGAGCAAGATTTGTCTGGCCTTGGAGAGAGAAAAAATGTTGAATCAATTTCACGGGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTAAAGGAGCAGGTCGAGCTTGTTCTCTCTCAATTCAAAAAAGCTAAAGGAAGGATTGATACACAAGATACCGAGCTGTATGTTAACCTCCACTCTCTCTATAACAACAGCAAAGATTCTACTACTGATCCTTCTGTCTTAAAGGGACTGGCTGAGAAGTTGCAGTTAATGGATGTAGTTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTGTTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAGATTGGCGTTTCTTCAAAAGAACAAAGTCATCCTCGCATTGGTGGACAAGCGACTGCTGGGAAGAAAGATATAACATCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACCTACGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACATTCAACATGCCCAAAAACTCAACAAGTCCTCACGAGCAAAACTCTTACGCCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGGTTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTGATGACTCCTGCTGAACGCTCCAAGTATGAAACTCTTCTAAACAAACTCACATCAGGTAACATTGAAGACAAGCGATCGGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAACGCAAACAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTCAGCCTCCTTTCAACAACGGACCCCCTCACCCAAGAACACGCTGTGACTGCATTGCTTAACCTTTCAATCTGTGACAATAACAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTCGTAGACGAATATAAAGTAATGATTGGCGCATCGGGAGCCATTCCGCCACTTATTGCTCTGCTCAATGAAGGTACTCAAAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAGGTAAAGGCAGTCAGGGGTGGTGTTGTCTCCATACTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTGGCCATACTGGCCAGCAATTCTGAAGGGCGGGCTGCCATCGGTGCAGCCAGATCCGTTCCCGTTTTGGTAGAATTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGTGCGGGAGACAAACGACATCTCGTGGAAGCAAAGGAGCTCGGAGTGATTAGTTTGCTTATAGATTTGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCGACACAATTGCTCGACCTAATAAACAGGTTTACAGAGCAGAAAGAGGCTGAGGCTCAAACTCAATCTCAGTCTCAGTCTGAGATCCCCCTGTTGCTGCCACCACCGCCACCACCGTCCGCAATCGGCAATGTCGAAAGCTGA 2001 46.68 MGEENNGGSFRSLIDLVNDIASISDYRYAVKKQYCNLARRLKLLIPMFEEMRDMKKPLPDDTIRALASLKEALESTKELLRTGSEGSKICLALEREKMLNQFHGVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKKAKGRIDTQDTELYVNLHSLYNNSKDSTTDPSVLKGLAEKLQLMDVVDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGVSSKEQSHPRIGGQATAGKKDITSLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKTLTPNYVLRSLIAQWCEANGVEPPQRSSSSQPSELMTPAERSKYETLLNKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVSLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAARSVPVLVEFIATGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVISLLIDLAENGTDRGKRKATQLLDLINRFTEQKEAEAQTQSQSQSEIPLLLPPPPPPSAIGNVES 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44541024 44545946 + Maker00000994 Lcy8g1815 640707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1815 666 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Lcy8g1815 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 CDD MLKL_NTD 13 139 - -
Lcy8g1815 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Lcy8g1815 666 PANTHER U BOX DOMAIN-CONTAINING 30 629 - -
Lcy8g1815 666 FunFam RING-type E3 ubiquitin transferase 256 332 - -
Lcy8g1815 666 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1815 666 SUPERFAMILY ARM repeat 355 627 IPR016024 -
Lcy8g1815 666 MobiDBLite consensus disorder prediction 634 648 - -
Lcy8g1815 666 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Lcy8g1815 666 Pfam Mixed lineage kinase domain-like N-terminal domain 28 117 IPR054000 -
Lcy8g1815 666 MobiDBLite consensus disorder prediction 634 666 - -
Lcy8g1815 666 FunFam RING-type E3 ubiquitin transferase 337 633 - -
Lcy8g1815 666 CDD RING-Ubox_PUB 260 312 IPR045210 -
Lcy8g1815 666 MobiDBLite consensus disorder prediction 649 666 - -
Lcy8g1815 666 Gene3D - 343 654 IPR011989 -
Lcy8g1815 666 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1815 666 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1815 666 SUPERFAMILY RING/U-box 253 334 - -
Lcy8g1815 666 SMART arm_5 424 464 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 SMART arm_5 547 587 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 SMART arm_5 465 505 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515(InterPro)
Lcy8g1815 666 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1804 Lcy-Chr5:40796872 Lcy8g1815 Lcy-Chr8:44541024 1.58E-54 dispersed
Lcy7g0059 Lcy-Chr7:472227 Lcy8g1815 Lcy-Chr8:44541024 2.22E-32 dispersed
Lcy7g1209 Lcy-Chr7:14709934 Lcy8g1815 Lcy-Chr8:44541024 6.73E-61 dispersed
Lcy8g1307 Lcy-Chr8:39757307 Lcy8g1815 Lcy-Chr8:44541024 4.44E-87 dispersed
Lcy8g1815 Lcy-Chr8:44541024 Lcy5g2232 Lcy-Chr5:45328806 1.77E-46 dispersed
Lcy1g0491 Lcy-Chr1:4317658 Lcy8g1815 Lcy-Chr8:44541024 4.94E-15 transposed
Lcy7g0632 Lcy-Chr7:5781207 Lcy8g1815 Lcy-Chr8:44541024 6.87E-148 transposed
Lcy7g0374 Lcy-Chr7:3169605 Lcy8g1815 Lcy-Chr8:44541024 3.64E-08 transposed
Lcy11g0195 Lcy-Chr11:2283176 Lcy8g1815 Lcy-Chr8:44541024 3.39E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1815 K27628 - csv:101221150 1087.79