Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1832 ATGAACAAAGGTTTTTGGATGACCAAGGGTCCTGGGAATGAAAATGATGCAAATTCAACTTTTGATAGCCCATCATTGTTAGACACAAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAGGCACAGGTTTTCCCCAACAAGAAGCAAGCAATTCAAGCTCCAAATAGCAAAATGACTGGAACGCTGTCAAATATGAATGTTCTTCATTGGGAGCAGCATTCTGCTAATTATCAGTCTGTTTCACATCAACTTATTGGTCGCATATTTGGACCTGAATCAGTAAGATCTGCTGACTTTGATCTAACAAAAGAATCTTCTGTAATTTCTGATAATTTGGATCTCGGGAGAAAAGGTATGGAAGATCCATATGGAGAAGATGCATCTGTGGGGTTGTCTATATCTCATGGTATGGAGGATCCTGAAGCATCTCTTAGCTATGGAGGAATTAGAAAAGTGAAAATCAACCAGGTTAAAGATAATATACATAGTCTGCAACCATGTCTAAGAAGCAATTCTAATAGGGAAGATAGTGGTCAACTATCCATAGAAGGTTACTATAAGGAAATTGAAGCGGGTCTTGTATCTGTGGGATCAGCCTATATTAAGGAGGACGACAGTTTCAATTTGATGAATCAAACGTCCACAGATGGGGATCACCATATTGGGTTACTGGGTCATAGTGAGAAGATGGATGGCAATGTTGTCTCCATTGATGATGATTACAGTAAGCGGGATCCAAATATAATCTCATTTGGTGGATTTCCTGATGACCAAGATATTATCTCTTTAGGCAGGACTCTTGGAAGCCATGACCCAGCATTCTACGAATCTTCATTCCAACCATCTGAAGCTGTTGGTGTCACAGAGTTGGAATCATCAAATTTTGATGTAGCTATAAGCAGTACTCAGATAGCTAAGCAAAAGCCTGACATGTCACTGAAGAGTAGACCGGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGTTTGATCTCAACCGGTATGCTCGATGGTGTGCCTGTGAAGTATGTTTCTGTAGCTAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGGCATGCTGGCTGCAAAACAAAACACCCAAACAATCATATATACTTTGAGAATGGAAAGACTATTTATCAGATAGTACAAGAATTGAGAAGCACTCCGGAGAGCTTGTTGTTTGATACAATTCAAACTATCTTTGGTGCTCCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACCCGTGAGCTTCAGCGCATATATGGCAAGGATGAGCTTAACCTTTAG 1398 40.13 MNKGFWMTKGPGNENDANSTFDSPSLLDTKRAHHWFIDGCEAQVFPNKKQAIQAPNSKMTGTLSNMNVLHWEQHSANYQSVSHQLIGRIFGPESVRSADFDLTKESSVISDNLDLGRKGMEDPYGEDASVGLSISHGMEDPEASLSYGGIRKVKINQVKDNIHSLQPCLRSNSNREDSGQLSIEGYYKEIEAGLVSVGSAYIKEDDSFNLMNQTSTDGDHHIGLLGHSEKMDGNVVSIDDDYSKRDPNIISFGGFPDDQDIISLGRTLGSHDPAFYESSFQPSEAVGVTELESSNFDVAISSTQIAKQKPDMSLKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44640467 44643957 - Maker00000644 Lcy8g1832 640724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1832 465 PANTHER AUTOIMMUNE REGULATOR 1 449 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Lcy8g1832 465 MobiDBLite consensus disorder prediction 1 23 - -
Lcy8g1832 465 Pfam Tify domain binding domain 360 415 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1832 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0866 Lcy-Chr7:8614634 Lcy8g1832 Lcy-Chr8:44640467 5.83E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0222 . 272 1061 PHD Transcription Factor Family AT3G53680 54.0 2.2e-241 832.8
Lcy7g0866 . 452 578 PHD Transcription Factor Family AT3G53680 55.1 6.1e-37 153.7
Lcy8g1832 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.0e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42