Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1859 | ATGACTATTTCAAGGCTCACACAACTTCTTTGTTCGACACCCGAGGATTCTACCCAACACAGCTACCTCTGGGGCATGGCTCTGATACTACTTGTAAGGGACTACCCTAGCCAATGTGGGACTTTGGTCGCACACCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAACTAGTCATCTATCCGTCCAACTCTCTAGGCTCCACCGCTTTACCGAGAGTTCTTGCTCTTATCTAGGACGACTCCTCTTCTCCGGAGTATACCCGCCTACCCAGAACTCAACCACGGACCTCCCCATGACTATTTCAAGGCTCACACAACTTCTTTGTTCGACACCCGAGGATTCTACCCAACACGGCTACCTCTGGGACATGGCTCTGATACCACTTTTCCACTTTCAAGCAGCGCTTTCTCCAAGAGACCCAATGGAACCGTTGGATAAACCACTGCCGAAGTCCTCGCCTCTCGCGCCATTTCCTCGGGACTCTCGAGGATCGCTCGAGGTTTTCAATCCCTCGGCCACTTACTCGTCCCGATCGATCAACTCCATTTCTCGGGCGAACCCGGCGTGGCCGAATTGGGTGGAGCCACGTAGCAGCGGGGAGTCGGAGTCGCCAAGAGTCGGCGCCAAACCGACGAGTAAATCCGGCGAGGAGATTACGTCATGGATGGCCTTCAAGGACTCGAACCCTTCACCACAACCGACCTCGCCGCTCGCTCAGAAGACAATTTCGGCTATTCTCAGCGACAAATCGCCGCCGAAATCAGCGGACGAAGTCGGCTCCGCCGCTTTACGCGCCGCCGAGTGGGGATTGGTGTTGAAAACCGATACGGAGACTGGGAAGCCGCAGGGCGTCGGAGTTCGAACTTCCGGCGGCGATGAACCGAATTCCAAACAGGAGCATTCGAGAAGAACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGACGATGGGGCAAGAGAAAGGGGGATTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAAATGACTGGCTATACTTCCAAGGAGGTTATCGGAAGAAATTGTCGATTTTTACAGGGTGCAGATACAGACCCAGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAATTTACTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTCAAATTTATTGGGATGCAAGTGGAGGTGAGCAAACACACAGAGGGCTTCAAAGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGATATGGCTACCAGTTCGGTGACGGAGATCGTGCAAGCGGTGAAGAGGCCTCGGTCTGTAAGTGAATATAGACCTCGGGCTCTAAGTGAATCTATGAACCGCCGATTAGTTAGAAAATCCGGCGGCGGCGGCGGCGGCGGCGGCGATGAGGAGGTTAGATTTGAAGCGACTATGGTTAGGCGAAAGTCAGAGAGTGCAGCAGTTTCAACTGGACGAAAATCACATGGAGGAAGTAGAAGGTCGATGCAGCGTATCAGTGAGCTGCCGGAGAAGAAACCCAAAAGGTTTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCATATGTTGAAACCTTTGATATTGAAGATGGTTCCGATGATGATAATGAGACCGATGAGGACGAGAGACCAGATAGCGTTGATGACAAAGTAAGGCAGAGGGAAATGAGGAAAGGTATTGATTTAGCTACTACCCTCGAACGTATAGAGAAAAACTTCGTCATTACCGATCCTAGATTGCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGGCATTCGAATGAGCCTAACAATATCTGTCATTATTCTGGATGTTATAGGTTTTTGCAAGGTCCTGAAACTGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAACCAAACAGAAGTTACAGTGCAGCTTATAAACTACACGAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTTATTGGAGTACAACTTGATGGTAGTCAGCACGTGGAACCGCTAAGCAATTGCATACCGGAAAATACTGCAAAAGAGGGTGAAAAATTGATAAAAGAAACTGCAGAAAACGTTGATTTGGCGGCTAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGGTGGTTCAACCGAAACCCCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTATAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAATTAAACCATTGGGATCGGGCGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGATCAGTATTTTGCAATGAAGGCTATGGATAAGGGTGTTATGCTTAACCGCAACAAGGTACATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGTCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCTACAAAGGTCTTAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTTCATTGTCAAGGGATAATTTACCGGGATTTGAAGCCTGAGAATGTTCTACTCCAGGGCAATGGACACGTGGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGCAAACCTCAGCTTTTGCTTCCAACGGCAAATGAGAAGAAAAAGCAAACAAGAGCTCAACAGGCTCCAATATTTATGGCTGAACCTATGCGAGCATCGAACTCATTCGTTGGAACTGAAGAGTACATAGCACCGGAAATCATTACCGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACAAGACAAAAAACTTTTGCCAACATTCTTCATAAGGATCTTAAATTTCCGAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGGGATCCCAAAAACCGGTTGGGTTCTCGAGAAGGAGCTAGTGAAATCAAACGACATCCTTTCTTCCGAGGTGTCAATTGGGCACTCGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGACCACCGATGCCGAAAAAGAAGCAAACAAGGCATCAGATTTTGATCTAAAAGATCTTGAACTCAGTGTTTTCTGA | 3528 | 46.97 | MTISRLTQLLCSTPEDSTQHSYLWGMALILLVRDYPSQCGTLVAHPTILPSNKVPPSLPSTSHLSVQLSRLHRFTESSCSYLGRLLFSGVYPPTQNSTTDLPMTISRLTQLLCSTPEDSTQHGYLWDMALIPLFHFQAALSPRDPMEPLDKPLPKSSPLAPFPRDSRGSLEVFNPSATYSSRSINSISRANPAWPNWVEPRSSGESESPRVGAKPTSKSGEEITSWMAFKDSNPSPQPTSPLAQKTISAILSDKSPPKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNSKQEHSRRTSNNSVRSSGDMSDDGARERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTEIVQAVKRPRSVSEYRPRALSESMNRRLVRKSGGGGGGGGDEEVRFEATMVRRKSESAAVSTGRKSHGGSRRSMQRISELPEKKPKRFSRRSFMGIMRKSQSYVETFDIEDGSDDDNETDEDERPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRHSNEPNNICHYSGCYRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPENTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKVVQPKPHRKDSPSWKAIQKIIDSGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVALTDFDLSCLTSCKPQLLLPTANEKKKQTRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQTTDAEKEANKASDFDLKDLELSVF | 1175 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 44891114 | 44905118 | - | Maker00001446 | Lcy8g1859 | 640751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 590 | 621 | - | - | |
| Lcy8g1859 | 1175 | Gene3D | Transferase(Phosphotransferase) domain 1 | 926 | 1140 | - | - | |
| Lcy8g1859 | 1175 | PANTHER | FLIPPASE KINASE 1-RELATED | 797 | 1153 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Lcy8g1859 | 1175 | NCBIfam | PAS domain S-box protein | 360 | 452 | IPR000014 | - | |
| Lcy8g1859 | 1175 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 641 | 756 | IPR035965 | - | |
| Lcy8g1859 | 1175 | Pfam | Protein kinase domain | 845 | 1129 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1859 | 1175 | SMART | pas_2 | 627 | 696 | IPR000014 | - | |
| Lcy8g1859 | 1175 | SMART | pas_2 | 335 | 404 | IPR000014 | - | |
| Lcy8g1859 | 1175 | SMART | serkin_6 | 842 | 1129 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1859 | 1175 | ProSiteProfiles | PAC domain profile. | 407 | 461 | IPR000700 | - | |
| Lcy8g1859 | 1175 | Gene3D | PAS domain | 347 | 502 | - | - | |
| Lcy8g1859 | 1175 | FunFam | LOV domain-containing protein | 841 | 925 | - | - | |
| Lcy8g1859 | 1175 | ProSiteProfiles | PAS repeat profile. | 629 | 714 | IPR000014 | - | |
| Lcy8g1859 | 1175 | Gene3D | PAS domain | 613 | 794 | - | - | |
| Lcy8g1859 | 1175 | CDD | STKc_phototropin_like | 840 | 1148 | - | - | |
| Lcy8g1859 | 1175 | ProSiteProfiles | Protein kinase domain profile. | 842 | 1129 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1859 | 1175 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 354 | 446 | IPR035965 | - | |
| Lcy8g1859 | 1175 | CDD | PAS | 640 | 756 | IPR000014 | - | |
| Lcy8g1859 | 1175 | ProSiteProfiles | PAS repeat profile. | 333 | 404 | IPR000014 | - | |
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 536 | 578 | - | - | |
| Lcy8g1859 | 1175 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 963 | 975 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy8g1859 | 1175 | Gene3D | Phosphorylase Kinase; domain 1 | 841 | 925 | - | - | |
| Lcy8g1859 | 1175 | SMART | pac_2 | 718 | 760 | IPR001610 | - | |
| Lcy8g1859 | 1175 | SMART | pac_2 | 410 | 452 | IPR001610 | - | |
| Lcy8g1859 | 1175 | FunFam | Putative LOV domain-containing protein | 347 | 503 | - | - | |
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 191 | 220 | - | - | |
| Lcy8g1859 | 1175 | Pfam | PAS domain | 648 | 756 | IPR000014 | - | |
| Lcy8g1859 | 1175 | Pfam | PAS domain | 354 | 450 | IPR000014 | - | |
| Lcy8g1859 | 1175 | FunFam | LOV domain-containing protein | 614 | 794 | - | - | |
| Lcy8g1859 | 1175 | FunFam | Putative LOV domain-containing protein | 926 | 1141 | - | - | |
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 278 | 327 | - | - | |
| Lcy8g1859 | 1175 | SUPERFAMILY | Protein kinase-like (PK-like) | 820 | 1151 | IPR011009 | - | |
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 145 | 173 | - | - | |
| Lcy8g1859 | 1175 | CDD | PAS | 360 | 449 | IPR000014 | - | |
| Lcy8g1859 | 1175 | ProSitePatterns | Protein kinases ATP-binding region signature. | 848 | 871 | IPR017441 | GO:0005524(InterPro) | |
| Lcy8g1859 | 1175 | ProSiteProfiles | PAC domain profile. | 715 | 769 | IPR000700 | - | |
| Lcy8g1859 | 1175 | MobiDBLite | consensus disorder prediction | 594 | 611 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0028 | Lcy-Chr5:472393 | Lcy8g1859 | Lcy-Chr8:44891114 | 3.22E-54 | dispersed | |
| Lcy7g0251 | Lcy-Chr7:2170576 | Lcy8g1859 | Lcy-Chr8:44891114 | 1.73E-51 | dispersed | |
| Lcy7g0605 | Lcy-Chr7:5456184 | Lcy8g1859 | Lcy-Chr8:44891114 | 3.00E-47 | dispersed | |
| Lcy8g1325 | Lcy-Chr8:39988621 | Lcy8g1859 | Lcy-Chr8:44891114 | 2.21E-253 | dispersed | |
| Lcy8g1859 | Lcy-Chr8:44891114 | Lcy8g1981 | Lcy-Chr8:46074575 | 3.44E-105 | dispersed | |
| Lcy8g1859 | Lcy-Chr8:44891114 | Lcy4g0413 | Lcy-Chr4:5030181 | 3.26E-276 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66145 | None | None | None | None | Lcy | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g1859 | K20715 | - | csv:101214662 | 1809.27 |