Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1861 ATGGAAAATTTCCAGTGGACCCGAGTTTGTCGTTTCGTGTCAATTCTTTCTGGTTTCTACGGTGCTTCAAGTGATCAATCAAACAGCGAGCGTTTGAGGTACACGCGCGTGGGACCGCGTTCTCGGCGTCAAACGCGTACCAGACAAGAAGCATTCCCCTACAGAAAAGGACAAAGATCTGTTGCAGACCAGCACGACCAGCCACAAAATAGTTGGGCAAATCATCCCATGCCACATTTGACGCCCAAGTTGACAACTCTTCCCTCTGTTTCATTGGCTTCAATTTCTGGCCTGGAAAATGGGTTGCTTTCGCCACAGCAGAAAACAGAGGAAAAGATTAGAGGGCAACGGGCCAAGCATTCTACCAGCTTCTTCAGAAAATATTCCCAAATTTGTAAAATTTTGCCCTTAGCTGTTACAGAAACAGTAAAAGTAAAGGCGAATTTGAATGTGAAAACAGGCAAAGAAGTAAAGGAGGTGGTGAGTGAGAATGAGCAGCTGGCGTCAAATATAAACAGAGAGTTTTCCAGGAAAGCAAAAACAAACGAAAAGATAGAAACATTTACATTCCACGAACTTGCAGCAGCGACAAAAAATTTCAAGTCAGATTGCTTTGTGGGCGAAGGGGGATTTGGTAAAGTTTACAAGGCCAATTTGAGAAGAATCAACCAGCTTGTAGCTATCAAGCAACTTGACCACAATGGGAGTCAAGGTGTAAGAGAATTCGTGGTGGAAGTGTTGACGTTAAGTTTGGCCAATCACCCAAATCTCGTAAAATTGTTAGGCTTTTGTGCAGACGGGGACGAAAGGCTGTTGGTTTATGAGTTCATGCCATTGGGATCACTCGACAAACATTTGTATGACGTTTCACCGGGCCAAAAAGCGCTTGATTGGAATACAAGAATGAAGATAGCAGTCGGTGCAGCAAGGGGATTGGAGTACTTGCACAACCAAATGAGACCTGCAGTTATATATCGAGATCTAAAATGTTCAAATATTTTGCTTGGTGAAGGGTATTGGCCTAAGCTCTCAGATTTTGGTCTAGCCAAAGTAGGACCCAGTGGAGATAACACACATGTTTCTACTAGAGTTATGGGAACATATGGATATTGTGCACCAGATTATGCAATGACGGGTCAATTGACATTCAAAAGTGATATCTATAGCTTTGGAGTAGTTCTCCTAGAGCTCATCACGGGAAGAAAAGCCATCGACTATACAAGGCCTCCAAAAGAGCTAAGTTTGGTACAATGGGCAACACCGTTGTTTCGAGATCGAAAGAGTTTCTTGTTAATGGCAGACCCGAGACTCGAAGGTCGATATCCTACGAGAGGATTGTACCAATGTCTTGCCATTGCATCAATGTGTCTCCAAGAGCAACCTGCTATGAGGCCAGTAATATCAGAAGTGGTCGCTGCTCTAGATTTCCTTGCTTCCCAAAATTATATCGGAAGGAGGAATTAG 1464 43.58 MENFQWTRVCRFVSILSGFYGASSDQSNSERLRYTRVGPRSRRQTRTRQEAFPYRKGQRSVADQHDQPQNSWANHPMPHLTPKLTTLPSVSLASISGLENGLLSPQQKTEEKIRGQRAKHSTSFFRKYSQICKILPLAVTETVKVKANLNVKTGKEVKEVVSENEQLASNINREFSRKAKTNEKIETFTFHELAAATKNFKSDCFVGEGGFGKVYKANLRRINQLVAIKQLDHNGSQGVREFVVEVLTLSLANHPNLVKLLGFCADGDERLLVYEFMPLGSLDKHLYDVSPGQKALDWNTRMKIAVGAARGLEYLHNQMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDYTRPPKELSLVQWATPLFRDRKSFLLMADPRLEGRYPTRGLYQCLAIASMCLQEQPAMRPVISEVVAALDFLASQNYIGRRN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44913548 44917971 - Maker00000818 Lcy8g1861 640753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1861 487 MobiDBLite consensus disorder prediction 23 84 - -
Lcy8g1861 487 SUPERFAMILY Protein kinase-like (PK-like) 186 479 IPR011009 -
Lcy8g1861 487 ProSiteProfiles Protein kinase domain profile. 200 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1861 487 Gene3D Phosphorylase Kinase; domain 1 157 276 - -
Lcy8g1861 487 PANTHER OS07G0668900 PROTEIN 163 483 - -
Lcy8g1861 487 CDD STKc_IRAK 206 475 - -
Lcy8g1861 487 Pfam Protein tyrosine and serine/threonine kinase 205 473 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1861 487 FunFam probable serine/threonine-protein kinase RLCKVII 172 276 - -
Lcy8g1861 487 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524(InterPro)
Lcy8g1861 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1861 487 SMART serkin_6 200 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1861 487 FunFam Serine/threonine-protein kinase PBS1 277 487 - -
Lcy8g1861 487 Gene3D Transferase(Phosphotransferase) domain 1 277 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0802 Lcy-Chr7:7768612 Lcy8g1861 Lcy-Chr8:44913548 4.06E-159 dispersed
Lcy8g1861 Lcy-Chr8:44913548 Lcy9g2323 Lcy-Chr9:47609372 1.13E-133 dispersed
Lcy5g0251 Lcy-Chr5:2372887 Lcy8g1861 Lcy-Chr8:44913548 1.84E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66146 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1861 - - - 0.0